Sub-family  

Parent family
HOM000634
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (3 genes)
ath
Arabidopsis thaliana (3 genes)
bdi
Brachypodium distachyon (2 genes)
cpa
Carica papaya (2 genes)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (1 gene)
gma
Glycine max (6 genes)
mdo
Malus domestica (1 gene)
mes
Manihot esculenta (4 genes)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (1 gene)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (1 gene)
osaindica
Oryza sativa ssp. indica (1 gene)
ppa
Physcomitrella patens (4 genes)
ptr
Populus trichocarpa (4 genes)
rco
Ricinus communis (3 genes)
sbi
Sorghum bicolor (1 gene)
tca
Theobroma cacao (2 genes)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (2 genes)
zma
Zea mays (3 genes)



The gene family ORTHO000739 has 48 genes in 22 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 3, showing 20 records out of 48 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL2G03420 aly name=fgenesh2_kg.2__262__AT1G62040.1;pid=475132;prot=eq;tid=475132 - scaffold_2 No
AL3G31170 aly name=fgenesh2_kg.3__2886__AT2G05630.1;pid=480185;prot=eq;tid=480185 - scaffold_3 No
AL7G20400 aly name=Al_scaffold_0007_1962;pid=858463;prot=eq;tid=889976 - scaffold_7 No
AT1G62040 ath autophagy 8c (ATG8C); FUNCTIONS IN: microtubule binding; INVOLVED IN: autophagy; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Light chain 3 (LC3) (InterPro:IPR004241); BEST Arabidopsis thaliana protein match is: Ubiquitin-like superfamily protein (TAIR:AT4G21980.2).;Ubiquitin-like superfamily protein transcript=eq;prot=eq; + 1 No
AT2G05630 ath in the Arabidopsis autophagy pathway;Ubiquitin-like superfamily protein transcript=eq;prot=eq; - 2 No
AT4G21980 ath Encodes APG8, a component of autophagy conjugation pathway. Delivered to the lumens of vacuole under nitrogen-starvation condition. Highest expression in flowers. mRNA abundance increased during dark-induced carbon starvation. Predominantly cytoplasmic with or without N starvation. Upon concanamycin A the protein accumulates in the central vacuole as punctuate structures that resemble autophagic bodies. This localization is more abundant upon N starvation.;Ubiquitin-like superfamily protein transcript=eq;prot=eq; + 4 No
BD0G00120 bdi beta-tubulin binding, microtubule binding (Blast2GO) pid=Bradi0098s00200.5;tid=Bradi0098s00200.5;GeneName=Bradi0098s00200;transcript=eq;prot=eq + scaffold_98 No
BD3G14980 bdi beta-tubulin binding, microtubule binding (Blast2GO) pid=Bradi3g14980.2;tid=Bradi3g14980.2;GeneName=Bradi3g14980;transcript=eq;prot=eq - Bd3 No
CP00012G02960 cpa name=evm.TU.supercontig_12.296;pid=evm.TU.supercontig_12.296;prot=eq;transcript=eq - supercontig_12 No
CP00087G00730 cpa name=evm.TU.supercontig_87.73;pid=evm.TU.supercontig_87.73;prot=eq;transcript=eq + supercontig_87 No
CR16G08740 cre name=estExt_GenewiseH_1.C_450083;pid=59275;prot=eq;tid=59275;transcript=eq - chromosome_16 No
FV3G25370 fve Autophagy-related protein 8C, Precursor (putative) transcript=eq;prot=eq;pid=gene03347 + LG3 No
GM01G41910 gma 01 pid=16245993;transcript=eq;prot=eq;name=Glyma01g41910.1 + Gm01 No
GM07G39090 gma 07 pid=16269230;transcript=eq;prot=eq;name=Glyma07g39090.1 + Gm07 No
GM09G00630 gma 09 pid=16274321;transcript=eq;prot=eq;name=Glyma09g00630.1 + Gm09 No
GM12G10510 gma 12 pid=16287086;transcript=eq;prot=eq;name=Glyma12g10510.1 - Gm12 No
GM15G11510 gma 15 pid=16298440;transcript=eq;prot=eq;name=Glyma15g11510.1 + Gm15 No
GM17G01650 gma 17 pid=16304062;transcript=eq;prot=eq;name=Glyma17g01650.1 - Gm17 No
MD03G017160 mdo transcript=eq;prot=eq;pid=MDP0000655948;tid=MDP0000655948;contig=MDC030855.6 - 3 No
ME02717G00020 mes PACid=17968857;RNAname=cassava4.1_019182m;GeneName=cassava4.1_019182m.g;transcript=eq;prot=eq + scaffold02717 No
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