Sub-family  

Parent family
HOM000682
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (2 genes)
ath
Arabidopsis thaliana (2 genes)
bdi
Brachypodium distachyon (1 gene)
cpa
Carica papaya (1 gene)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (2 genes)
gma
Glycine max (3 genes)
mdo
Malus domestica (9 genes)
mes
Manihot esculenta (3 genes)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (1 gene)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (2 genes)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (4 genes)
ptr
Populus trichocarpa (3 genes)
rco
Ricinus communis (3 genes)
sbi
Sorghum bicolor (2 genes)
tca
Theobroma cacao (1 gene)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (2 genes)
zma
Zea mays (3 genes)



The gene family ORTHO000713 has 49 genes in 22 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 3, showing 20 records out of 49 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL4G30930 aly name=scaffold_403234.1;pid=903733;prot=eq;tid=935246 - scaffold_4 No
AL5G30060 aly name=fgenesh2_kg.5__2413__AT3G59540.1;pid=486421;prot=eq;tid=486421 - scaffold_5 No
AT2G43460 ath Ribosomal L38e protein family; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: cytosolic ribosome, ribosome, cytosolic large ribosomal subunit; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L38e (InterPro:IPR002675); BEST Arabidopsis thaliana protein match is: Ribosomal L38e protein family (TAIR:AT3G59540.1); Has 621 Blast hits to 621 proteins in 253 species: Archae - 3; Bacteria - 0; Metazoa - 265; Fungi - 127; Plants - 120; Viruses - 0; Other Eukaryotes - 106 (source: NCBI BLink).;Ribosomal L38e protein family transcript=eq;prot=eq; - 2 No
AT3G59540 ath Ribosomal L38e protein family; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: ribosome, cytosolic large ribosomal subunit; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L38e (InterPro:IPR002675); BEST Arabidopsis thaliana protein match is: Ribosomal L38e protein family (TAIR:AT2G43460.1); Has 621 Blast hits to 621 proteins in 253 species: Archae - 3; Bacteria - 0; Metazoa - 265; Fungi - 127; Plants - 120; Viruses - 0; Other Eukaryotes - 106 (source: NCBI BLink).;Ribosomal L38e protein family transcript=eq;prot=eq; - 3 No
BD1G25302 bdi pid=Bradi1g25302.1;tid=Bradi1g25302.1;GeneName=Bradi1g25302;transcript=eq;prot=eq + Bd1 No
CP00009G03110 cpa name=evm.TU.supercontig_9.311;pid=evm.TU.supercontig_9.311;prot=eq;transcript=eq - supercontig_9 No
CR26G00420 cre name=estExt_fgenesh2_pg.C_810007;pid=194928;prot=eq;tid=194928;transcript=eq + scaffold_26 No
FV2G05810 fve 60S ribosomal protein L38 (similar to) transcript=eq;prot=eq;pid=gene25594 - LG2 No
FV2G45080 fve 60S ribosomal protein L38 (similar to) transcript=eq;prot=eq;pid=gene28832 + LG2 No
GM13G29330 gma 13 pid=16291980;transcript=eq;prot=eq;name=Glyma13g29330.1 + Gm13 No
GM13G42090 gma 13 pid=16293489;transcript=eq;prot=eq;name=Glyma13g42090.1 - Gm13 No
GM15G09740 gma 15 pid=16298233;transcript=eq;prot=eq;name=Glyma15g09740.1 - Gm15 No
MD00G040090 mdo transcript=eq;prot=eq;pid=MDP0000593964;tid=MDP0000593964;contig=MDC001706.249 + MDC001706.249 No
MD00G040130 mdo transcript=eq;prot=eq;pid=MDP0000653200;tid=MDP0000653200;contig=MDC001706.356 - MDC001706.356 No
MD00G071170 mdo transcript=eq;prot=eq;pid=MDP0000120668;tid=MDP0000120668;contig=MDC002958.434 + MDC002958.434 No
MD00G127900 mdo transcript=eq;prot=eq;pid=MDP0000489242;tid=MDP0000489242;contig=MDC005450.339 + MDC005450.339 No
MD00G165480 mdo transcript=eq;prot=eq;pid=MDP0000939190;tid=MDP0000939190;contig=MDC007087.121 - MDC007087.121 No
MD00G461540 mdo transcript=eq;prot=eq;pid=MDP0000435610;tid=MDP0000435610;contig=MDC021332.247 + MDC021332.247 No
MD03G018260 mdo transcript=eq;prot=eq;pid=MDP0000434417;tid=MDP0000434417;contig=MDC021332.250 + 3 No
MD04G000760 mdo transcript=eq;prot=eq;pid=MDP0000153255;tid=MDP0000153255;contig=MDC021502.278 - 4 No
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