Sub-family  

Parent family
HOM000044
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (4 genes)
ath
Arabidopsis thaliana (3 genes)
bdi
Brachypodium distachyon (3 genes)
cpa
Carica papaya (1 gene)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (1 gene)
gma
Glycine max (3 genes)
lja
Lotus japonicus (1 gene)
mdo
Malus domestica (3 genes)
mes
Manihot esculenta (2 genes)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (3 genes)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (3 genes)
osaindica
Oryza sativa ssp. indica (3 genes)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (1 gene)
ptr
Populus trichocarpa (3 genes)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (2 genes)
smo
Selaginella moellendorffii (2 genes)
tca
Theobroma cacao (1 gene)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (3 genes)



The gene family ORTHO000706 has 49 genes in 25 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 3, showing 20 records out of 49 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL3G01020 aly name=fgenesh1_pm.C_scaffold_3000097;pid=317081;prot=eq;tid=317081 + scaffold_3 No
AL5G08700 aly name=fgenesh2_kg.5__675__AT3G29160.2;pid=484683;prot=eq;tid=484683 - scaffold_5 No
AL7G38870 aly name=scaffold_704100.1;pid=916358;prot=eq;tid=947871 - scaffold_7 No
AL7G38890 aly name=fgenesh1_pm.C_scaffold_7002776;pid=330549;prot=eq;tid=330549 - scaffold_7 No
AT3G01090 ath encodes a SNF1-related protein kinase that physically interacts with SCF subunit SKP1/ASK1 and 20S proteosome subunit PAD1. It can also interact with PRL1 DWD-containing protein. Based on in vitro degradation assays and cul4cs and prl1 mutants, there is evidence that AKIN10 is degraded in a proteasome-dependent manner, and that this depends on a CUL4-PRL1 E3 ligase;SNF1 kinase homolog 10 transcript=eq;prot=eq; - 3 No
AT3G29160 ath encodes a SNF1-related protein kinase that physically interacts with SCF subunit SKP1/ASK1 and 20S proteosome subunit PAD1. It has also been shown to interact with the WD protein PDL1.;SNF1 kinase homolog 11 transcript=eq;prot=eq; - 3 No
AT5G39440 ath SNF1-related protein kinase 1.3 (SnRK1.3); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Kinase-associated KA1 (InterPro:IPR001772), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (InterPro:IPR015940), Protein kinase, Snf1-like AMPK (InterPro:IPR015741), Protein kinase, catalytic domain (InterPro:IPR000719), Calcium/calmodulin-dependent protein kinase-like (InterPro:IPR020636); BEST Arabidopsis thaliana protein match is: SNF1 kinase homolog 11 (TAIR:AT3G29160.2); Has 134559 Blast hits to 132128 proteins in 4775 species: Archae - 156; Bacteria - 15425; Metazoa - 49691; Fungi - 13625; Plants - 32691; Viruses - 538; Other Eukaryotes - 22433 (source: NCBI BLink).;SNF1-related protein kinase 1.3 transcript=eq;prot=eq; + 5 No
BD1G65630 bdi CAMK_KIN1/SNF1/Nim1_like_AMPKh.1 - CAMK includes calcium/calmodulin depedent protein kinases, expressed, subfamily KIN1/SNF1/Nim1_like(CAMK_2)_AMPKh pid=Bradi1g65630.1;tid=Bradi1g65630.1;GeneName=Bradi1g65630;transcript=eq;prot=eq - Bd1 No
BD2G18970 bdi CAMK_KIN1/SNF1/Nim1_like_AMPKh.2 - CAMK includes calcium/calmodulin depedent protein kinases, expressed, subfamily KIN1/SNF1/Nim1_like(CAMK_2)_AMPKh pid=Bradi2g18970.1;tid=Bradi2g18970.1;GeneName=Bradi2g18970;transcript=eq;prot=eq + Bd2 No
BD2G48830 bdi CAMK_KIN1/SNF1/Nim1_like_AMPKh.3 - CAMK includes calcium/calmodulin depedent protein kinases, expressed, subfamily KIN1/SNF1/Nim1_like(CAMK_2)_AMPKh pid=Bradi2g48830.3;tid=Bradi2g48830.3;GeneName=Bradi2g48830;transcript=eq;prot=eq + Bd2 No
CP00014G01260 cpa name=evm.TU.supercontig_14.126;pid=evm.TU.supercontig_14.126;prot=eq;transcript=eq - supercontig_14 No
CR04G00010 cre name=pasa_Sanger_mRNA24344;pid=423214;prot=eq;tid=414789;transcript=eq + chromosome_4 No
FV6G43800 fve SNF1-related protein kinase catalytic subunit alpha KIN10 (AKIN10) (putative) transcript=eq;prot=eq;pid=gene04397 + LG6 No
GM08G26180 gma 08 pid=16272508;transcript=eq;prot=eq;name=Glyma08g26180.1 - Gm08 No
GM13G05700 gma 13 pid=16289762;transcript=eq;prot=eq;name=Glyma13g05700.1 - Gm13 No
GM18G49770 gma 18 pid=16310967;transcript=eq;prot=eq;name=Glyma18g49770.1 - Gm18 No
LJ1G029510 lja partial;prot=eq;transcript=eq;scaffold=CM0141;name=chr1.CM0141.520.nd - chr1 No
MD00G246530 mdo transcript=eq;prot=eq;pid=MDP0000191788;tid=MDP0000191788;contig=MDC010618.271 + MDC010618.271 No
MD09G004160 mdo transcript=eq;prot=eq;pid=MDP0000173500;tid=MDP0000173500;contig=MDC005569.588 - 9 No
MD17G004530 mdo transcript=eq;prot=eq;pid=MDP0000320932;tid=MDP0000320932;contig=MDC010618.274 - 17 No
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