Sub-family  

Parent family
HOM000032
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (2 genes)
ath
Arabidopsis thaliana (4 genes)
bdi
Brachypodium distachyon (2 genes)
cpa
Carica papaya (1 gene)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (2 genes)
gma
Glycine max (4 genes)
lja
Lotus japonicus (1 gene)
mdo
Malus domestica (3 genes)
mes
Manihot esculenta (3 genes)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (3 genes)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (2 genes)
osaindica
Oryza sativa ssp. indica (2 genes)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (2 genes)
ptr
Populus trichocarpa (3 genes)
rco
Ricinus communis (2 genes)
sbi
Sorghum bicolor (2 genes)
tca
Theobroma cacao (3 genes)
vvi
Vitis vinifera (2 genes)
zma
Zea mays (2 genes)



The gene family ORTHO000703 has 49 genes in 23 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 3, showing 20 records out of 49 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G47180 aly name=fgenesh2_kg.1__4298__AT1G52280.1;pid=474344;prot=eq;tid=474344 - scaffold_1 No
AL3G20420 aly name=scaffold_302228.1;pid=898258;prot=eq;tid=929771 + scaffold_3 No
AT1G49300 ath encodes a small GTPase involved in membrane trafficking. Gene expression is induced by hydrogen peroxide and lines. Lines overexpressing the gene are more tolerant to high salt and hyperosmotic conditions.;RAB GTPase homolog G3E transcript=eq;prot=eq; + 1 No
AT1G52280 ath RAB GTPase homolog G3D (RABG3d); FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Small GTPase (InterPro:IPR020851), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579); BEST Arabidopsis thaliana protein match is: RAB GTPase homolog G3C (TAIR:AT3G16100.1); Has 26220 Blast hits to 26194 proteins in 779 species: Archae - 32; Bacteria - 221; Metazoa - 13502; Fungi - 3923; Plants - 2848; Viruses - 20; Other Eukaryotes - 5674 (source: NCBI BLink).;RAB GTPase homolog G3D transcript=eq;prot=eq; - 1 No
AT3G16100 ath RAB GTPase homolog G3C (RABG3c); FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; LOCATED IN: plasma membrane, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Small GTPase (InterPro:IPR020851), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579); BEST Arabidopsis thaliana protein match is: RAB GTPase homolog G3D (TAIR:AT1G52280.1); Has 25544 Blast hits to 25522 proteins in 774 species: Archae - 27; Bacteria - 219; Metazoa - 13379; Fungi - 3488; Plants - 2822; Viruses - 20; Other Eukaryotes - 5589 (source: NCBI BLink).;RAB GTPase homolog G3C transcript=eq;prot=eq; + 3 No
AT3G18820 ath RAB GTPase homolog G3F (RAB7B); FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; LOCATED IN: plasma membrane, nucleus; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Small GTPase (InterPro:IPR020851), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579); BEST Arabidopsis thaliana protein match is: RAB GTPase homolog G3E (TAIR:AT1G49300.2); Has 26432 Blast hits to 26399 proteins in 759 species: Archae - 38; Bacteria - 171; Metazoa - 13566; Fungi - 4011; Plants - 2887; Viruses - 20; Other Eukaryotes - 5739 (source: NCBI BLink).;RAB GTPase homolog G3F transcript=eq;prot=eq; + 3 No
BD2G07570 bdi GTPase activity (Blast2GO) pid=Bradi2g07570.1;tid=Bradi2g07570.1;GeneName=Bradi2g07570;transcript=eq;prot=eq + Bd2 No
BD2G19750 bdi GTPase activity (Blast2GO) pid=Bradi2g19750.7;tid=Bradi2g19750.7;GeneName=Bradi2g19750;transcript=eq;prot=eq - Bd2 No
CP00062G01330 cpa name=evm.TU.supercontig_62.134;pid=evm.TU.supercontig_62.134;prot=eq;transcript=eq - supercontig_62 No
CR06G13310 cre name=pm.chromosome_6_#_687;pid=337340;prot=eq;tid=337347;transcript=eq - chromosome_6 No
FV5G07060 fve Ras-related protein Rab7 transcript=eq;prot=eq;pid=gene20433 + LG5 No
FV6G16130 fve Ras-related protein Rab7 transcript=eq;prot=eq;pid=gene25744 - LG6 No
GM07G00660 gma 07 pid=16265680;transcript=eq;prot=eq;name=Glyma07g00660.1 - Gm07 No
GM08G21940 gma 08 pid=16272033;transcript=eq;prot=eq;name=Glyma08g21940.1 - Gm08 No
GM11G12630 gma 11 pid=16283652;transcript=eq;prot=eq;name=Glyma11g12630.1 + Gm11 No
GM12G04830 gma 12 pid=16286420;transcript=eq;prot=eq;name=Glyma12g04830.1 + Gm12 No
LJ0G096680 lja partial;prot=eq;transcript=eq;scaffold=LjSGA_031184;name=LjSGA_031184.1 + LjSGA_031184 No
MD00G451770 mdo transcript=eq;prot=eq;pid=MDP0000315756;tid=MDP0000315756;contig=MDC020806.65 + MDC020806.65 No
MD14G004670 mdo transcript=eq;prot=eq;pid=MDP0000325364;tid=MDP0000325364;contig=MDC017167.112 - 14 No
MD17G015300 mdo transcript=eq;prot=eq;pid=MDP0000127031;tid=MDP0000127031;contig=MDC012442.250 - 17 No
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