Sub-family  

Parent family
HOM000032
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (4 genes)
ath
Arabidopsis thaliana (3 genes)
bdi
Brachypodium distachyon (2 genes)
cpa
Carica papaya (2 genes)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (2 genes)
gma
Glycine max (4 genes)
lja
Lotus japonicus (1 gene)
mdo
Malus domestica (2 genes)
mes
Manihot esculenta (5 genes)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (1 gene)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (2 genes)
osaindica
Oryza sativa ssp. indica (3 genes)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (2 genes)
ptr
Populus trichocarpa (1 gene)
rco
Ricinus communis (2 genes)
sbi
Sorghum bicolor (2 genes)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (2 genes)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (2 genes)
zma
Zea mays (3 genes)



The gene family ORTHO000627 has 51 genes in 25 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 3, showing 20 records out of 51 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G00120 aly name=scaffold_100013.1;pid=887219;prot=eq;tid=918732 + scaffold_1 No
AL6G41720 aly name=scaffold_604311.1;pid=912254;prot=eq;tid=943767 - scaffold_6 No
AL7G25440 aly name=scaffold_702702.1;pid=914960;prot=eq;tid=946473 + scaffold_7 No
AL8G00720 aly name=fgenesh2_kg.8__74__AT5G47200.1;pid=494258;prot=eq;tid=494258 - scaffold_8 No
AT1G02130 ath Belongs to the Rab1 GTPase subfamily. This small GTP-binding protein is required in ER to Golgi transportation.;RAS 5 transcript=eq;prot=eq; - 1 No
AT4G17530 ath RAB GTPase homolog 1C (RAB1C); FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; LOCATED IN: plasma membrane, vacuole, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Small GTPase (InterPro:IPR020851), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579); BEST Arabidopsis thaliana protein match is: RAB GTPase homolog 1A (TAIR:AT5G47200.1); Has 29496 Blast hits to 29428 proteins in 784 species: Archae - 23; Bacteria - 169; Metazoa - 15486; Fungi - 4134; Plants - 3462; Viruses - 20; Other Eukaryotes - 6202 (source: NCBI BLink).;RAB GTPase homolog 1C transcript=eq;prot=eq; - 4 No
AT5G47200 ath RAB GTPase homolog 1A (RAB1A); FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Small GTPase (InterPro:IPR020851), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579); BEST Arabidopsis thaliana protein match is: RAB GTPase homolog 1C (TAIR:AT4G17530.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;RAB GTPase homolog 1A transcript=eq;prot=eq; + 5 No
BD1G27157 bdi pid=Bradi1g27157.1;tid=Bradi1g27157.1;GeneName=Bradi1g27157;transcript=eq;prot=eq + Bd1 No
BD2G41180 bdi GTPase activity (Blast2GO) pid=Bradi2g41180.1;tid=Bradi2g41180.1;GeneName=Bradi2g41180;transcript=eq;prot=eq - Bd2 No
CP00022G00660 cpa name=evm.TU.supercontig_22.66;pid=evm.TU.supercontig_22.66;prot=eq;transcript=eq - supercontig_22 No
CP00672G00040 cpa name=evm.TU.supercontig_672.4;pid=evm.TU.supercontig_672.4;prot=eq;transcript=eq - supercontig_672 No
CR12G15920 cre name=estExt_GenewiseH_1.C_870017;pid=60490;prot=eq;tid=60490;transcript=eq - chromosome_12 No
FV5G31980 fve GTP-binding protein YPTM2 (similar to) transcript=eq;prot=eq;pid=gene10815 + LG5 No
FV7G32180 fve GTP-binding protein YPTM2 (similar to) transcript=eq;prot=eq;pid=gene21158 + LG7 No
GM05G05260 gma 05 pid=16258396;transcript=eq;prot=eq;name=Glyma05g05260.1 - Gm05 No
GM09G37860 gma 09 pid=16277567;transcript=eq;prot=eq;name=Glyma09g37860.1 - Gm09 No
GM17G15550 gma 17 pid=16305695;transcript=eq;prot=eq;name=Glyma17g15550.1 - Gm17 No
GM18G48610 gma 18 pid=16310848;transcript=eq;prot=eq;name=Glyma18g48610.1 + Gm18 No
LJ1G028930 lja prot=eq;transcript=eq;scaffold=LjT29L18;name=chr1.LjT29L18.70.nd + chr1 No
MD06G005160 mdo transcript=eq;prot=eq;pid=MDP0000155528;tid=MDP0000155528;contig=MDC003427.431 + 6 No
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