Sub-family  

Parent family
HOM001590
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (2 genes)
ath
Arabidopsis thaliana (2 genes)
bdi
Brachypodium distachyon (2 genes)
cpa
Carica papaya (2 genes)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (2 genes)
gma
Glycine max (4 genes)
lja
Lotus japonicus (1 gene)
mdo
Malus domestica (3 genes)
mes
Manihot esculenta (5 genes)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (2 genes)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (2 genes)
osaindica
Oryza sativa ssp. indica (2 genes)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (5 genes)
ptr
Populus trichocarpa (4 genes)
rco
Ricinus communis (2 genes)
sbi
Sorghum bicolor (2 genes)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (2 genes)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (2 genes)
zma
Zea mays (2 genes)



The gene family ORTHO000556 has 54 genes in 25 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 3, showing 20 records out of 54 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G26650 aly name=fgenesh2_kg.1__2670__AT1G26880.1;pid=472716;prot=eq;tid=472716 - scaffold_1 No
AL2G17870 aly name=scaffold_201821.1;pid=894747;prot=eq;tid=926260 + scaffold_2 No
AT1G26880 ath Ribosomal protein L34e superfamily protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: ribosome, nucleolus, chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L34e, conserved site (InterPro:IPR018065), Ribosomal protein L34e (InterPro:IPR008195); BEST Arabidopsis thaliana protein match is: ribosomal protein L34 (TAIR:AT1G69620.1); Has 959 Blast hits to 959 proteins in 320 species: Archae - 70; Bacteria - 0; Metazoa - 301; Fungi - 143; Plants - 198; Viruses - 0; Other Eukaryotes - 247 (source: NCBI BLink).;Ribosomal protein L34e superfamily protein transcript=eq;prot=eq; - 1 No
AT1G69620 ath putative 60S ribosomal protein L34;ribosomal protein L34 transcript=eq;prot=eq; + 1 No
BD3G16600 bdi pid=Bradi3g16600.1;tid=Bradi3g16600.1;GeneName=Bradi3g16600;transcript=eq;prot=eq - Bd3 No
BD3G16620 bdi pid=Bradi3g16620.1;tid=Bradi3g16620.1;GeneName=Bradi3g16620;transcript=eq;prot=eq - Bd3 No
CP00017G02130 cpa name=evm.TU.supercontig_17.213;pid=evm.TU.supercontig_17.213;prot=eq;transcript=eq - supercontig_17 No
CP00128G00210 cpa name=evm.TU.supercontig_128.21;pid=evm.TU.supercontig_128.21;prot=eq;transcript=eq - supercontig_128 No
CR16G02770 cre name=MAY_e_gwH.37.79.1;pid=195595;prot=eq;tid=195595;transcript=eq - chromosome_16 No
FV0G05570 fve 60S ribosomal protein L34-1 (similar to) transcript=eq;prot=eq;pid=gene04747 + scf0513158 No
FV5G13350 fve 60S ribosomal protein L34 (similar to) transcript=eq;prot=eq;pid=gene26004 + LG5 No
GM08G41280 gma 08 pid=16273450;transcript=eq;prot=eq;name=Glyma08g41280.1 - Gm08 No
GM09G37360 gma 09 pid=16277513;transcript=eq;prot=eq;name=Glyma09g37360.1 + Gm09 No
GM18G14980 gma 18 pid=16308851;transcript=eq;prot=eq;name=Glyma18g14980.1 + Gm18 No
GM18G49340 gma 18 pid=16310923;transcript=eq;prot=eq;name=Glyma18g49340.1 - Gm18 No
LJ0G422560 lja prot=eq;transcript=eq;scaffold=LjT46I09;name=LjT46I09.110.nd - chr0 No
MD09G003620 mdo transcript=eq;prot=eq;pid=MDP0000129561;tid=MDP0000129561;contig=MDC017003.258 - 9 No
MD13G004740 mdo transcript=eq;prot=eq;pid=MDP0000486185;tid=MDP0000486185;contig=MDC009328.440 + 13 No
MD14G019090 mdo transcript=eq;prot=eq;pid=MDP0000388226;tid=MDP0000388226;contig=MDC010686.158 - 14 No
ME03834G00070 mes PACid=17974918;RNAname=cassava4.1_019391m;GeneName=cassava4.1_019391m.g;transcript=eq;prot=eq + scaffold03834 No
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