Sub-family  

Parent family
HOM000115
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (2 genes)
ath
Arabidopsis thaliana (4 genes)
bdi
Brachypodium distachyon (3 genes)
cpa
Carica papaya (1 gene)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (1 gene)
gma
Glycine max (6 genes)
lja
Lotus japonicus (2 genes)
mdo
Malus domestica (1 gene)
mes
Manihot esculenta (1 gene)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (3 genes)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (4 genes)
osaindica
Oryza sativa ssp. indica (1 gene)
ppa
Physcomitrella patens (6 genes)
ptr
Populus trichocarpa (4 genes)
rco
Ricinus communis (2 genes)
sbi
Sorghum bicolor (3 genes)
tca
Theobroma cacao (2 genes)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (2 genes)
zma
Zea mays (3 genes)



The gene family ORTHO000545 has 55 genes in 23 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 3, showing 20 records out of 55 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL7G23950 aly name=scaffold_702547.1;pid=914805;prot=eq;tid=946318 - scaffold_7 No
AL8G02660 aly name=scaffold_800277.1;pid=916877;prot=eq;tid=948390 + scaffold_8 No
AT2G42740 ath encodes a cytosolic ribosomal protein L16, which is a constituent of 60S large ribosomal complex. Gene is expressed in root stele and anthers and expression is induced by auxin treatment.;ribosomal protein large subunit 16A transcript=eq;prot=eq; + 2 No
AT3G58700 ath Ribosomal L5P family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic ribosome, cytosolic large ribosomal subunit, vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L5 (InterPro:IPR002132), Ribosomal protein L5, conserved site (InterPro:IPR020929), Ribosomal protein L5, N-terminal (InterPro:IPR020927), Ribosomal protein L5, C-terminal (InterPro:IPR020928); BEST Arabidopsis thaliana protein match is: Ribosomal L5P family protein (TAIR:AT5G45775.2); Has 7854 Blast hits to 7854 proteins in 2814 species: Archae - 312; Bacteria - 5083; Metazoa - 254; Fungi - 163; Plants - 278; Viruses - 0; Other Eukaryotes - 1764 (source: NCBI BLink).;Ribosomal L5P family protein transcript=eq;prot=eq; + 3 No
AT4G18730 ath encodes a cytosolic ribosomal protein L16, which is a constituent of 60S large ribosomal complex. Gene is expressed in root and shoot apical meristems and in lateral root primordia. Expression in lateral root primordia is induced by auxin.;ribosomal protein L16B transcript=eq;prot=eq; + 4 No
AT5G45775 ath Ribosomal L5P family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic large ribosomal subunit, vacuole; EXPRESSED IN: male gametophyte, leaf; CONTAINS InterPro DOMAIN/s: Ribosomal protein L5 (InterPro:IPR002132), Ribosomal protein L5, conserved site (InterPro:IPR020929), Ribosomal protein L5, N-terminal (InterPro:IPR020927), Ribosomal protein L5, C-terminal (InterPro:IPR020928); BEST Arabidopsis thaliana protein match is: ribosomal protein L16B (TAIR:AT4G18730.1); Has 7854 Blast hits to 7854 proteins in 2814 species: Archae - 312; Bacteria - 5083; Metazoa - 254; Fungi - 163; Plants - 278; Viruses - 0; Other Eukaryotes - 1764 (source: NCBI BLink).;Ribosomal L5P family protein transcript=eq;prot=eq; - 5 No
BD2G06467 bdi pid=Bradi2g06467.2;tid=Bradi2g06467.2;GeneName=Bradi2g06467;transcript=eq;prot=eq + Bd2 No
BD2G32640 bdi pid=Bradi2g32640.1;tid=Bradi2g32640.1;GeneName=Bradi2g32640;transcript=eq;prot=eq - Bd2 No
BD3G09030 bdi pid=Bradi3g09030.1;tid=Bradi3g09030.1;GeneName=Bradi3g09030;transcript=eq;prot=eq - Bd3 No
CP00052G01470 cpa name=evm.TU.supercontig_52.148;pid=evm.TU.supercontig_52.148;prot=eq;transcript=eq - supercontig_52 No
CR01G05610 cre name=MAY_e_gwW.1.736.1;pid=195587;prot=eq;tid=195587;transcript=eq - chromosome_1 No
FV3G14380 fve 60S ribosomal protein L11 (similar to) transcript=eq;prot=eq;pid=gene29695 + LG3 No
GM04G12320 gma 04 pid=16255724;transcript=eq;prot=eq;name=Glyma04g12320.1 + Gm04 No
GM06G42460 gma 06 pid=16264946;transcript=eq;prot=eq;name=Glyma06g42460.1 + Gm06 No
GM06G42680 gma 06 pid=16264966;transcript=eq;prot=eq;name=Glyma06g42680.1 - Gm06 No
GM06G48130 gma 06 pid=16265560;transcript=eq;prot=eq;name=Glyma06g48130.1 - Gm06 No
GM12G15800 gma 12 pid=16287601;transcript=eq;prot=eq;name=Glyma12g15800.1 - Gm12 No
GM15G36190 gma 15 pid=16300203;transcript=eq;prot=eq;name=Glyma15g36190.1 - Gm15 No
LJ0G405880 lja prot=eq;transcript=eq;scaffold=CM0319;name=CM0319.40.nc - chr0 No
LJ0G434110 lja prot=eq;transcript=eq;scaffold=LjT43K05;name=LjT43K05.240.nd - chr0 No
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