Sub-family  

Parent family
HOM001177
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (3 genes)
ath
Arabidopsis thaliana (3 genes)
bdi
Brachypodium distachyon (3 genes)
cpa
Carica papaya (2 genes)
cre
Chlamydomonas reinhardtii (1 gene)
gma
Glycine max (4 genes)
lja
Lotus japonicus (1 gene)
mdo
Malus domestica (1 gene)
mes
Manihot esculenta (4 genes)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (1 gene)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (3 genes)
osaindica
Oryza sativa ssp. indica (2 genes)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (6 genes)
ptr
Populus trichocarpa (4 genes)
rco
Ricinus communis (2 genes)
sbi
Sorghum bicolor (3 genes)
tca
Theobroma cacao (2 genes)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (2 genes)
zma
Zea mays (4 genes)



The gene family ORTHO000516 has 55 genes in 23 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 3, showing 20 records out of 55 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G03850 aly name=fgenesh2_kg.1__380__AT1G04480.1;pid=470426;prot=eq;tid=470426 + scaffold_1 No
AL3G04000 aly name=scaffold_300444.1;pid=896474;prot=eq;tid=927987 + scaffold_3 No
AL4G18590 aly name=fgenesh2_kg.4__1338__AT2G33370.1;pid=482278;prot=eq;tid=482278 - scaffold_4 No
AT1G04480 ath Ribosomal protein L14p/L23e family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L14b/L23e (InterPro:IPR000218), Ribosomal protein L14 conserved site (InterPro:IPR019972); BEST Arabidopsis thaliana protein match is: Ribosomal protein L14p/L23e family protein (TAIR:AT3G04400.1); Has 9301 Blast hits to 9300 proteins in 3178 species: Archae - 321; Bacteria - 5427; Metazoa - 383; Fungi - 266; Plants - 815; Viruses - 0; Other Eukaryotes - 2089 (source: NCBI BLink).;Ribosomal protein L14p/L23e family protein transcript=eq;prot=eq; + 1 No
AT2G33370 ath Ribosomal protein L14p/L23e family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, cytosolic large ribosomal subunit, nucleolus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L14b/L23e (InterPro:IPR000218), Ribosomal protein L14 conserved site (InterPro:IPR019972); BEST Arabidopsis thaliana protein match is: Ribosomal protein L14p/L23e family protein (TAIR:AT3G04400.1); Has 9301 Blast hits to 9300 proteins in 3178 species: Archae - 321; Bacteria - 5427; Metazoa - 383; Fungi - 266; Plants - 815; Viruses - 0; Other Eukaryotes - 2089 (source: NCBI BLink).;Ribosomal protein L14p/L23e family protein transcript=eq;prot=eq; - 2 No
AT3G04400 ath embryo defective 2171 (emb2171); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, embryo development ending in seed dormancy; LOCATED IN: ribosome, cytosolic large ribosomal subunit; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L14b/L23e (InterPro:IPR000218), Ribosomal protein L14 conserved site (InterPro:IPR019972); BEST Arabidopsis thaliana protein match is: Ribosomal protein L14p/L23e family protein (TAIR:AT2G33370.1); Has 9322 Blast hits to 9321 proteins in 3192 species: Archae - 322; Bacteria - 5444; Metazoa - 383; Fungi - 267; Plants - 817; Viruses - 0; Other Eukaryotes - 2089 (source: NCBI BLink).;Ribosomal protein L14p/L23e family protein transcript=eq;prot=eq; + 3 No
BD1G75790 bdi pid=Bradi1g75790.1;tid=Bradi1g75790.1;GeneName=Bradi1g75790;transcript=eq;prot=eq - Bd1 No
BD3G28300 bdi pid=Bradi3g28300.1;tid=Bradi3g28300.1;GeneName=Bradi3g28300;transcript=eq;prot=eq - Bd3 No
BD3G55140 bdi pid=Bradi3g55140.1;tid=Bradi3g55140.1;GeneName=Bradi3g55140;transcript=eq;prot=eq + Bd3 No
CP00044G00080 cpa name=evm.TU.supercontig_44.8;pid=evm.TU.supercontig_44.8;prot=eq;transcript=eq + supercontig_44 No
CP33972G00010 cpa name=evm.TU.contig_33972.1;pid=evm.TU.contig_33972.1;prot=eq;transcript=eq - contig_33972 No
CR04G00050 cre name=acegs_kg.scaffold_40000025;pid=159282;prot=eq;tid=159282;transcript=eq + chromosome_4 No
GM03G32380 gma 03 pid=16253057;transcript=eq;prot=eq;name=Glyma03g32380.1 - Gm03 No
GM10G04560 gma 10 pid=16278568;transcript=eq;prot=eq;name=Glyma10g04560.1 - Gm10 No
GM13G18830 gma 13 pid=16290766;transcript=eq;prot=eq;name=Glyma13g18830.1 - Gm13 No
GM19G35110 gma 19 pid=16313807;transcript=eq;prot=eq;name=Glyma19g35110.1 - Gm19 No
LJ1G048240 lja prot=eq;transcript=eq;scaffold=CM0295;name=chr1.CM0295.1040.nc - chr1 No
MD00G233280 mdo transcript=eq;prot=eq;pid=MDP0000194017;tid=MDP0000194017;contig=MDC010137.203 - MDC010137.203 No
ME01551G00530 mes PACid=17962054;RNAname=cassava4.1_018727m;GeneName=cassava4.1_018727m.g;transcript=eq;prot=eq + scaffold01551 No
ME07005G00020 mes PACid=17968826;RNAname=cassava4.1_018736m;GeneName=cassava4.1_018736m.g;transcript=eq;prot=eq + scaffold07005 No
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