Sub-family  

Parent family
HOM000171
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (2 genes)
ath
Arabidopsis thaliana (2 genes)
bdi
Brachypodium distachyon (3 genes)
cpa
Carica papaya (1 gene)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (2 genes)
gma
Glycine max (4 genes)
lja
Lotus japonicus (2 genes)
mdo
Malus domestica (2 genes)
mes
Manihot esculenta (3 genes)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (1 gene)
osa
Oryza sativa ssp. japonica (3 genes)
osaindica
Oryza sativa ssp. indica (3 genes)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (3 genes)
ptr
Populus trichocarpa (4 genes)
rco
Ricinus communis (2 genes)
sbi
Sorghum bicolor (3 genes)
smo
Selaginella moellendorffii (2 genes)
tca
Theobroma cacao (2 genes)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (2 genes)
zma
Zea mays (6 genes)



The gene family ORTHO000508 has 56 genes in 24 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 3, showing 20 records out of 56 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL5G05710 aly name=fgenesh2_kg.5__473__AT3G26935.1;pid=484481;prot=eq;tid=484481 - scaffold_5 No
AL7G36650 aly name=scaffold_703854.1;pid=916112;prot=eq;tid=947625 - scaffold_7 No
AT3G26935 ath DHHC-type zinc finger family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, DHHC-type (InterPro:IPR001594); BEST Arabidopsis thaliana protein match is: DHHC-type zinc finger family protein (TAIR:AT5G41060.1); Has 5153 Blast hits to 5144 proteins in 252 species: Archae - 0; Bacteria - 0; Metazoa - 2200; Fungi - 770; Plants - 850; Viruses - 0; Other Eukaryotes - 1333 (source: NCBI BLink).;DHHC-type zinc finger family protein transcript=eq;prot=eq; - 3 No
AT5G41060 ath DHHC-type zinc finger family protein; FUNCTIONS IN: zinc ion binding; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, DHHC-type (InterPro:IPR001594); BEST Arabidopsis thaliana protein match is: DHHC-type zinc finger family protein (TAIR:AT3G26935.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).;DHHC-type zinc finger family protein transcript=eq;prot=eq; + 5 No
BD2G59330 bdi protein-cysteine S-palmitoleyltransferase activity (Blast2GO) pid=Bradi2g59330.1;tid=Bradi2g59330.1;GeneName=Bradi2g59330;transcript=eq;prot=eq - Bd2 No
BD3G41420 bdi palmitoyltransferase activity (Blast2GO) pid=Bradi3g41420.1;tid=Bradi3g41420.1;GeneName=Bradi3g41420;transcript=eq;prot=eq - Bd3 No
BD4G34790 bdi protein-cysteine S-palmitoleyltransferase activity (Blast2GO) pid=Bradi4g34790.1;tid=Bradi4g34790.1;GeneName=Bradi4g34790;transcript=eq;prot=eq - Bd4 No
CP00004G01310 cpa name=evm.TU.supercontig_4.131;pid=evm.TU.supercontig_4.131;prot=eq;transcript=eq - supercontig_4 No
CR01G01470 cre name=pasa_Sanger_mRNA174;pid=406578;prot=eq;tid=390359;transcript=eq + chromosome_1 No
FV0G09340 fve Probable S-acyltransferase At3g26935 (putative) transcript=eq;prot=eq;pid=gene06461 - scf0513158 No
FV6G51460 fve Probable S-acyltransferase At3g26935 (putative) transcript=eq;prot=eq;pid=gene01361 + LG6 No
GM02G07190 gma 02 pid=16247267;transcript=eq;prot=eq;name=Glyma02g07190.1 - Gm02 No
GM16G05670 gma 16 pid=16301603;transcript=eq;prot=eq;name=Glyma16g05670.1 + Gm16 No
GM16G26140 gma 16 pid=16302932;transcript=eq;prot=eq;name=Glyma16g26140.1 - Gm16 No
GM19G27160 gma 19 pid=16312948;transcript=eq;prot=eq;name=Glyma19g27160.1 + Gm19 No
LJ0G055900 lja partial;prot=eq;transcript=eq;scaffold=LjSGA_020511;name=LjSGA_020511.2 - LjSGA_020511 No
LJ4G031380 lja prot=eq;transcript=eq;scaffold=CM0175;name=chr4.CM0175.520.nc - chr4 No
MD00G142640 mdo transcript=eq;prot=eq;pid=MDP0000257271;tid=MDP0000257271;contig=MDC006114.336 + MDC006114.336 No
MD00G476960 mdo transcript=eq;prot=eq;pid=MDP0000261721;tid=MDP0000261721;contig=MDC022206.380 - MDC022206.380 No
ME01701G00480 mes PACid=17965067;RNAname=cassava4.1_007455m;GeneName=cassava4.1_007455m.g;transcript=eq;prot=eq + scaffold01701 No
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