Sub-family  

Parent family
HOM001607
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (2 genes)
ath
Arabidopsis thaliana (2 genes)
bdi
Brachypodium distachyon (4 genes)
cpa
Carica papaya (2 genes)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (2 genes)
gma
Glycine max (4 genes)
lja
Lotus japonicus (1 gene)
mdo
Malus domestica (4 genes)
mes
Manihot esculenta (3 genes)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (2 genes)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (2 genes)
osaindica
Oryza sativa ssp. indica (3 genes)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (5 genes)
ptr
Populus trichocarpa (4 genes)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (2 genes)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (1 gene)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (5 genes)



The gene family ORTHO000497 has 56 genes in 25 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
This page uses the Flash plugin.




Index of genes with 1 constraints:

Page 1 of 3, showing 20 records out of 56 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL2G21180 aly name=scaffold_202163.1;pid=895089;prot=eq;tid=926602 - scaffold_2 No
AL3G04490 aly name=fgenesh2_kg.3__447__AT3G04770.1;pid=477746;prot=eq;tid=477746 - scaffold_3 No
AT1G72370 ath acidic protein associated to 40S ribosomal subunit of ribosomes. Involved in polysome formation during active protein synthesis. Expressed in actively growing tissue.;40s ribosomal protein SA transcript=eq;prot=eq; - 1 No
AT3G04770 ath 40s ribosomal protein SA B (RPSAb); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, chloroplast, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S2 (InterPro:IPR001865), Ribosomal protein S2, conserved site (InterPro:IPR018130), Ribosomal protein S2, eukaryotic/archaeal (InterPro:IPR005707); BEST Arabidopsis thaliana protein match is: 40s ribosomal protein SA (TAIR:AT1G72370.1); Has 3452 Blast hits to 3450 proteins in 1205 species: Archae - 263; Bacteria - 1638; Metazoa - 562; Fungi - 334; Plants - 225; Viruses - 0; Other Eukaryotes - 430 (source: NCBI BLink).;40s ribosomal protein SA B transcript=eq;prot=eq; - 3 No
BD1G20880 bdi laminin receptor activity (Blast2GO) pid=Bradi1g20880.1;tid=Bradi1g20880.1;GeneName=Bradi1g20880;transcript=eq;prot=eq - Bd1 No
BD1G23780 bdi laminin receptor activity (Blast2GO) pid=Bradi1g23780.1;tid=Bradi1g23780.1;GeneName=Bradi1g23780;transcript=eq;prot=eq + Bd1 No
BD1G60310 bdi laminin receptor activity (Blast2GO) pid=Bradi1g60310.1;tid=Bradi1g60310.1;GeneName=Bradi1g60310;transcript=eq;prot=eq - Bd1 No
BD1G72480 bdi laminin receptor activity (Blast2GO) pid=Bradi1g72480.1;tid=Bradi1g72480.1;GeneName=Bradi1g72480;transcript=eq;prot=eq + Bd1 No
CP00025G01750 cpa name=evm.TU.supercontig_25.175;pid=evm.TU.supercontig_25.175;prot=eq;transcript=eq + supercontig_25 No
CP00080G00730 cpa name=evm.TU.supercontig_80.73;pid=evm.TU.supercontig_80.73;prot=eq;transcript=eq + supercontig_80 No
CR10G03300 cre name=estExt_gwp_1H.C_80054;pid=126059;prot=eq;tid=126059;transcript=eq - chromosome_10 No
FV0G16510 fve 40S ribosomal protein SA (similar to) transcript=eq;prot=eq;pid=gene05419 + scf0513160 No
FV1G00220 fve 40S ribosomal protein SA (putative) transcript=eq;prot=eq;pid=gene02033 - LG1 No
GM07G04890 gma 07 pid=16266216;transcript=eq;prot=eq;name=Glyma07g04890.1 + Gm07 No
GM08G17000 gma 08 pid=16271433;transcript=eq;prot=eq;name=Glyma08g17000.1 + Gm08 No
GM15G42150 gma 15 pid=16300805;transcript=eq;prot=eq;name=Glyma15g42150.1 - Gm15 No
GM16G01460 gma 16 pid=16301092;transcript=eq;prot=eq;name=Glyma16g01460.1 + Gm16 No
LJ3G024170 lja prot=eq;transcript=eq;scaffold=LjT15F18;name=chr3.LjT15F18.130.nd + chr3 No
MD00G041270 mdo transcript=eq;prot=eq;pid=MDP0000231146;tid=MDP0000231146;contig=MDC001758.144 + MDC001758.144 No
MD05G016690 mdo transcript=eq;prot=eq;pid=MDP0000708887;tid=MDP0000708887;contig=MDC007990.240 - 5 No
<< previous
1 | 2 | 3 next >>

Download genes

Include following columns
gene_id
species
description
comment
strand
chr
outlier