Sub-family  

Parent family
HOM000283
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (2 genes)
ath
Arabidopsis thaliana (2 genes)
bdi
Brachypodium distachyon (3 genes)
cpa
Carica papaya (1 gene)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (2 genes)
gma
Glycine max (5 genes)
lja
Lotus japonicus (2 genes)
mdo
Malus domestica (5 genes)
mes
Manihot esculenta (2 genes)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (6 genes)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (3 genes)
osaindica
Oryza sativa ssp. indica (3 genes)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (2 genes)
ptr
Populus trichocarpa (2 genes)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (2 genes)
smo
Selaginella moellendorffii (2 genes)
tca
Theobroma cacao (1 gene)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (2 genes)
zma
Zea mays (3 genes)



The gene family ORTHO000494 has 56 genes in 25 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 3, showing 20 records out of 56 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G26600 aly name=fgenesh2_kg.1__2664__AT1G26830.1;pid=472710;prot=eq;tid=472710 + scaffold_1 No
AL2G17930 aly name=fgenesh2_kg.2__1230__AT1G69670.1;pid=476100;prot=eq;tid=476100 - scaffold_2 No
AT1G26830 ath Cullin, putative, similar to Cullin homolog 3 (CUL-3) SP:Q13618, GI:3639052 from (Homo sapiens); contains Pfam profile PF00888: Cullin family. Interacts with other components of E3 ligase complex suggesting it functions in RUB-modification. Forms complexes with BTB domain proteins forming a novel class of E3-based ubiquitin protein-ligase complexes. Mutant is early flowering and has a reduced sensitivity to far-red light. cul3a/cul3b homozygous/heterozygous plants are embryo lethal.;cullin 3 transcript=eq;prot=eq; + 1 No
AT1G69670 ath cullin, putative, contains similarity to Cullin homolog 3 (CUL-3) SP:Q13618, GI:3639052 from (Homo sapiens); contains Pfam profile PF00888: Cullin family. Interacts with members of AtBPM family and RBX1 suggesting it is part of an E3 ligase complex involved in RUB modification.;cullin 3B transcript=eq;prot=eq; - 1 No
BD3G15900 bdi Cullin, subfamily cullin, putative pid=Bradi3g15900.1;tid=Bradi3g15900.1;GeneName=Bradi3g15900;transcript=eq;prot=eq + Bd3 No
BD3G59330 bdi Cullin, subfamily cullin, putative pid=Bradi3g59330.1;tid=Bradi3g59330.1;GeneName=Bradi3g59330;transcript=eq;prot=eq + Bd3 No
BD5G23650 bdi Cullin, subfamily cullin, putative pid=Bradi5g23650.1;tid=Bradi5g23650.1;GeneName=Bradi5g23650;transcript=eq;prot=eq + Bd5 No
CP00128G00090 cpa name=evm.TU.supercontig_128.9;pid=evm.TU.supercontig_128.9;prot=eq;transcript=eq + supercontig_128 No
CR07G02450 cre name=estExt_gwp_1H.C_60065;pid=127081;prot=eq;tid=127081;transcript=eq + chromosome_7 No
FV0G05670 fve Cullin-3 (CUL-3) (similar to) transcript=eq;prot=eq;pid=gene04757 - scf0513158 No
FV6G44880 fve Cullin-3 (CUL-3) (similar to) transcript=eq;prot=eq;pid=gene03848 - LG6 No
GM02G11850 gma 02 pid=16247777;transcript=eq;prot=eq;name=Glyma02g11850.1 + Gm02 No
GM08G41130 gma 08 pid=16273433;transcript=eq;prot=eq;name=Glyma08g41130.1 + Gm08 No
GM13G05310 gma 13 pid=16289720;transcript=eq;prot=eq;name=Glyma13g05310.1 + Gm13 No
GM18G15240 gma 18 pid=16308874;transcript=eq;prot=eq;name=Glyma18g15240.1 - Gm18 No
GM19G02540 gma 19 pid=16311677;transcript=eq;prot=eq;name=Glyma19g02540.1 + Gm19 No
LJ0G181560 lja partial;prot=eq;transcript=eq;scaffold=LjSGA_057396;name=LjSGA_057396.1 - LjSGA_057396 No
LJ0G422630 lja partial;prot=eq;transcript=eq;scaffold=LjT46I09;name=LjT46I09.180.nd - chr0 No
MD00G103550 mdo transcript=eq;prot=eq;pid=MDP0000277452;tid=MDP0000277452;contig=MDC004414.467 + MDC004414.467 No
MD00G315150 mdo transcript=eq;prot=eq;pid=MDP0000503094;tid=MDP0000503094;contig=MDC013357.207 + MDC013357.207 No
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