Sub-family  

Parent family
HOM000032
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (3 genes)
ath
Arabidopsis thaliana (4 genes)
bdi
Brachypodium distachyon (3 genes)
cpa
Carica papaya (2 genes)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (2 genes)
gma
Glycine max (5 genes)
lja
Lotus japonicus (2 genes)
mes
Manihot esculenta (3 genes)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (4 genes)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (2 genes)
osaindica
Oryza sativa ssp. indica (2 genes)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (5 genes)
ptr
Populus trichocarpa (3 genes)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (2 genes)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (3 genes)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (4 genes)
zma
Zea mays (1 gene)



The gene family ORTHO000481 has 57 genes in 24 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 3, showing 20 records out of 57 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL5G14300 aly name=fgenesh2_kg.5__977__AT3G46060.1;pid=484985;prot=eq;tid=484985 + scaffold_5 No
AL5G23640 aly name=fgenesh2_kg.5__1739__AT3G53610.1;pid=485747;prot=eq;tid=485747 - scaffold_5 No
AL8G26020 aly name=fgenesh2_kg.8__1936__AT5G59840.1;pid=496120;prot=eq;tid=496120 - scaffold_8 No
AT3G46060 ath small GTP-binding protein (ara-3);RAB GTPase homolog 8A transcript=eq;prot=eq; + 3 No
AT3G53610 ath GTPase AtRAB8 (atrab8);RAB GTPase homolog 8 transcript=eq;prot=eq; - 3 No
AT5G03520 ath RAB GTPase homolog 8C (RAB8C); FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Small GTPase (InterPro:IPR020851), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579); BEST Arabidopsis thaliana protein match is: RAB GTPase homolog E1E (TAIR:AT3G09900.1); Has 29771 Blast hits to 29709 proteins in 824 species: Archae - 21; Bacteria - 191; Metazoa - 15611; Fungi - 4242; Plants - 3476; Viruses - 20; Other Eukaryotes - 6210 (source: NCBI BLink).;RAB GTPase homolog 8C transcript=eq;prot=eq; + 5 No
AT5G59840 ath Ras-related small GTP-binding family protein; FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Small GTPase (InterPro:IPR020851), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579); BEST Arabidopsis thaliana protein match is: RAB GTPase homolog 8A (TAIR:AT3G46060.3); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).;Ras-related small GTP-binding family protein transcript=eq;prot=eq; - 5 No
BD1G03820 bdi GTPase activity (Blast2GO) pid=Bradi1g03820.1;tid=Bradi1g03820.1;GeneName=Bradi1g03820;transcript=eq;prot=eq - Bd1 No
BD2G23120 bdi GTPase activity (Blast2GO) pid=Bradi2g23120.1;tid=Bradi2g23120.1;GeneName=Bradi2g23120;transcript=eq;prot=eq + Bd2 No
BD2G54460 bdi GTPase activity (Blast2GO) pid=Bradi2g54460.2;tid=Bradi2g54460.2;GeneName=Bradi2g54460;transcript=eq;prot=eq + Bd2 No
CP00163G00270 cpa name=evm.TU.supercontig_163.27;pid=evm.TU.supercontig_163.27;prot=eq;transcript=eq - supercontig_163 No
CP00190G00270 cpa name=evm.TU.supercontig_190.27;pid=evm.TU.supercontig_190.27;prot=eq;transcript=eq + supercontig_190 No
CR15G01220 cre name=SAN_163210;pid=195520;prot=eq;tid=195520;transcript=eq + chromosome_15 No
FV0G31900 fve Ras-related protein ARA-3 (similar to) transcript=eq;prot=eq;pid=gene13955 + scf0513178 No
FV7G27230 fve Ras-related protein ARA-3 (similar to) transcript=eq;prot=eq;pid=gene26686 - LG7 No
GM02G10450 gma 02 pid=16247621;transcript=eq;prot=eq;name=Glyma02g10450.1 + Gm02 No
GM10G43590 gma 10 pid=16282004;transcript=eq;prot=eq;name=Glyma10g43590.1 + Gm10 No
GM11G15120 gma 11 pid=16283956;transcript=eq;prot=eq;name=Glyma11g15120.1 + Gm11 No
GM18G52450 gma 18 pid=16311237;transcript=eq;prot=eq;name=Glyma18g52450.1 - Gm18 No
GM20G23210 gma 20 pid=16316525;transcript=eq;prot=eq;name=Glyma20g23210.1 - Gm20 No
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