Sub-family  

Parent family
HOM001095
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (2 genes)
ath
Arabidopsis thaliana (2 genes)
bdi
Brachypodium distachyon (2 genes)
cpa
Carica papaya (1 gene)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (3 genes)
gma
Glycine max (4 genes)
lja
Lotus japonicus (2 genes)
mdo
Malus domestica (6 genes)
mes
Manihot esculenta (3 genes)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (2 genes)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (2 genes)
osaindica
Oryza sativa ssp. indica (2 genes)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (4 genes)
ptr
Populus trichocarpa (4 genes)
rco
Ricinus communis (2 genes)
sbi
Sorghum bicolor (2 genes)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (2 genes)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (2 genes)
zma
Zea mays (5 genes)



The gene family ORTHO000468 has 58 genes in 25 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 3, showing 20 records out of 58 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL6G20590 aly name=scaffold_602125.1;pid=910068;prot=eq;tid=941581 - scaffold_6 No
AL8G25150 aly name=fgenesh2_kg.8__1848__AT5G59240.1;pid=496032;prot=eq;tid=496032 + scaffold_8 No
AT5G20290 ath Ribosomal protein S8e family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: in 8 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S8e (InterPro:IPR001047), Ribosomal protein S8e, conserved site (InterPro:IPR018283), Ribosomal protein S8e/ribosomal biogenesis NSA2= (InterPro:IPR022309); BEST Arabidopsis thaliana protein match is: Ribosomal protein S8e family protein (TAIR:AT5G59240.1); Has 1084 Blast hits to 1080 proteins in 433 species: Archae - 252; Bacteria - 1; Metazoa - 368; Fungi - 161; Plants - 120; Viruses - 0; Other Eukaryotes - 182 (source: NCBI BLink).;Ribosomal protein S8e family protein transcript=eq;prot=eq; - 5 No
AT5G59240 ath Ribosomal protein S8e family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, ribosome, membrane; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Ribosomal protein S8e (InterPro:IPR001047), Ribosomal protein S8e, conserved site (InterPro:IPR018283), Ribosomal protein S8e/ribosomal biogenesis NSA2= (InterPro:IPR022309); BEST Arabidopsis thaliana protein match is: Ribosomal protein S8e family protein (TAIR:AT5G20290.1); Has 1068 Blast hits to 1064 proteins in 429 species: Archae - 247; Bacteria - 0; Metazoa - 364; Fungi - 161; Plants - 120; Viruses - 0; Other Eukaryotes - 176 (source: NCBI BLink).;Ribosomal protein S8e family protein transcript=eq;prot=eq; - 5 No
BD1G51357 bdi pid=Bradi1g51357.1;tid=Bradi1g51357.1;GeneName=Bradi1g51357;transcript=eq;prot=eq - Bd1 No
BD3G43560 bdi pid=Bradi3g43560.1;tid=Bradi3g43560.1;GeneName=Bradi3g43560;transcript=eq;prot=eq + Bd3 No
CP00012G02100 cpa name=evm.TU.supercontig_12.210;pid=evm.TU.supercontig_12.210;prot=eq;transcript=eq + supercontig_12 No
CR06G05070 cre name=MAY_chlre3.3.122.1.1;pid=195605;prot=eq;tid=195605;transcript=eq - chromosome_6 No
FV2G13780 fve 40S ribosomal protein S8 (similar to) transcript=eq;prot=eq;pid=gene17432 - LG2 No
FV3G26710 fve 40S ribosomal protein S8 (similar to) transcript=eq;prot=eq;pid=gene03523 - LG3 No
FV3G26730 fve 40S ribosomal protein S8 (similar to) transcript=eq;prot=eq;pid=gene03525 - LG3 No
GM08G43690 gma 08 pid=16273729;transcript=eq;prot=eq;name=Glyma08g43690.1 - Gm08 No
GM08G46070 gma 08 pid=16273991;transcript=eq;prot=eq;name=Glyma08g46070.1 - Gm08 No
GM18G09430 gma 18 pid=16308393;transcript=eq;prot=eq;name=Glyma18g09430.1 + Gm18 No
GM18G32680 gma 18 pid=16309482;transcript=eq;prot=eq;name=Glyma18g32680.1 - Gm18 No
LJ0G029590 lja partial;prot=eq;transcript=eq;scaffold=LjSGA_014026;name=LjSGA_014026.1 - LjSGA_014026 No
LJ0G121580 lja partial;prot=eq;transcript=eq;scaffold=LjSGA_038243;name=LjSGA_038243.1 + LjSGA_038243 No
MD00G122810 mdo transcript=eq;prot=eq;pid=MDP0000168216;tid=MDP0000168216;contig=MDC005226.285 + MDC005226.285 No
MD00G258620 mdo transcript=eq;prot=eq;pid=MDP0000138660;tid=MDP0000138660;contig=MDC011084.375 + MDC011084.375 No
MD00G335780 mdo transcript=eq;prot=eq;pid=MDP0000202935;tid=MDP0000202935;contig=MDC014224.198 + MDC014224.198 No
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