Sub-family  

Parent family
HOM000191
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (7 genes)
ath
Arabidopsis thaliana (6 genes)
bdi
Brachypodium distachyon (2 genes)
cpa
Carica papaya (1 gene)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (2 genes)
gma
Glycine max (5 genes)
lja
Lotus japonicus (2 genes)
mdo
Malus domestica (4 genes)
mes
Manihot esculenta (3 genes)
mrcc299
Micromonas sp. RCC299 (2 genes)
mtr
Medicago truncatula (3 genes)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (2 genes)
osaindica
Oryza sativa ssp. indica (2 genes)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (4 genes)
ptr
Populus trichocarpa (3 genes)
rco
Ricinus communis (2 genes)
sbi
Sorghum bicolor (2 genes)
smo
Selaginella moellendorffii (2 genes)
tca
Theobroma cacao (2 genes)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (2 genes)
zma
Zea mays (3 genes)



The gene family ORTHO000354 has 65 genes in 25 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
This page uses the Flash plugin.




Index of genes with 1 constraints:

Page 1 of 4, showing 20 records out of 65 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G10360 aly name=fgenesh2_kg.1__1113__AT1G10450.1;pid=471159;prot=eq;tid=471159 + scaffold_1 No
AL1G24860 aly name=Al_scaffold_0001_2428;pid=880661;prot=eq;tid=912174 - scaffold_1 No
AL1G26000 aly name=fgenesh2_kg.1__2634__AT1G24190.1;pid=472680;prot=eq;tid=472680 - scaffold_1 No
AL2G06240 aly name=scaffold_200636.1;pid=893562;prot=eq;tid=925075 - scaffold_2 No
AL2G18390 aly name=fgenesh2_kg.2__1260__AT1G70060.1;pid=476130;prot=eq;tid=476130 + scaffold_2 No
AL3G00760 aly name=fgenesh2_kg.3__82__AT3G01320.1;pid=477381;prot=eq;tid=477381 - scaffold_3 No
AL6G14830 aly name=fgenesh2_kg.6__1480__AT5G15020.1;pid=488346;prot=eq;tid=488346 - scaffold_6 No
AT1G10450 ath Encodes SIN3-like 6, a homolog of the transcriptional repressor SIN3 (AT1G24190).;SIN3-like 6 transcript=eq;prot=eq; + 1 No
AT1G24190 ath Enhances AtERF7-mediated transcriptional repression. RNAi lines show ABA hypersensitivity. Interacts with ERF7 and HDA19.;SIN3-like 3 transcript=eq;prot=eq; - 1 No
AT1G59890 ath SIN3-like 5 (SNL5); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Histone deacetylase interacting (InterPro:IPR013194), Paired amphipathic helix (InterPro:IPR003822); BEST Arabidopsis thaliana protein match is: SIN3-like 6 (TAIR:AT1G10450.1).;SIN3-like 5 transcript=eq;prot=eq; + 1 No
AT1G70060 ath Encodes a homolog of the transcriptional repressor SIN3 (AT1G24190).;SIN3-like 4 transcript=eq;prot=eq; + 1 No
AT3G01320 ath Encodes SIN3-like 1, a homolog of the transcriptional repressor SIN3 (AT1G24190).;SIN3-like 1 transcript=eq;prot=eq; + 3 No
AT5G15020 ath Encodes a homolog of the transcriptional repressor SIN3 (AT1G24190).;SIN3-like 2 transcript=eq;prot=eq; - 5 No
BD2G00860 bdi pid=Bradi2g00860.1;tid=Bradi2g00860.1;GeneName=Bradi2g00860;transcript=eq;prot=eq - Bd2 No
BD2G40052 bdi pid=Bradi2g40052.2;tid=Bradi2g40052.2;GeneName=Bradi2g40052;transcript=eq;prot=eq + Bd2 No
CP00005G03120 cpa name=evm.TU.supercontig_5.312;pid=evm.TU.supercontig_5.312;prot=eq;transcript=eq + supercontig_5 No
CR03G06730 cre name=estExt_gwp_1W.C_820053;pid=140464;prot=eq;tid=140464;transcript=eq - chromosome_3 No
FV4G22620 fve Paired amphipathic helix protein Sin3 (AtSin3) (putative) transcript=eq;prot=eq;pid=gene00734 - LG4 No
FV6G04800 fve Paired amphipathic helix protein Sin3 (AtSin3) (probable) transcript=eq;prot=eq;pid=gene01325 + LG6 No
GM01G04490 gma 01 pid=16243393;transcript=eq;prot=eq;name=Glyma01g04490.1 - Gm01 No
<< previous
1 | 2 | 3 | 4 next >>

Download genes

Include following columns
gene_id
species
description
comment
strand
chr
outlier