Sub-family  

Parent family
HOM000526
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (4 genes)
ath
Arabidopsis thaliana (5 genes)
bdi
Brachypodium distachyon (4 genes)
cpa
Carica papaya (2 genes)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (1 gene)
gma
Glycine max (4 genes)
lja
Lotus japonicus (3 genes)
mdo
Malus domestica (4 genes)
mes
Manihot esculenta (3 genes)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (2 genes)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (2 genes)
osaindica
Oryza sativa ssp. indica (2 genes)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (5 genes)
ptr
Populus trichocarpa (4 genes)
rco
Ricinus communis (2 genes)
sbi
Sorghum bicolor (1 gene)
smo
Selaginella moellendorffii (2 genes)
tca
Theobroma cacao (3 genes)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (6 genes)
zma
Zea mays (2 genes)



The gene family ORTHO000348 has 66 genes in 25 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
This page uses the Flash plugin.




Index of genes with 1 constraints:

Page 1 of 4, showing 20 records out of 66 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL4G08930 aly name=fgenesh1_pg.C_scaffold_4000667;pid=344325;prot=eq;tid=344325 - scaffold_4 No
AL5G12940 aly name=fgenesh1_pg.C_scaffold_5000974;pid=347582;prot=eq;tid=347582 + scaffold_5 No
AL6G28380 aly name=fgenesh2_kg.6__2753__AT5G27570.1;pid=489619;prot=eq;tid=489619 + scaffold_6 No
AL7G07950 aly name=fgenesh2_kg.7__793__AT4G33270.1;pid=491360;prot=eq;tid=491360 + scaffold_7 No
AT4G33260 ath putative cdc20 protein (CDC20.2);Transducin family protein / WD-40 repeat family protein transcript=eq;prot=eq; - 4 No
AT4G33270 ath putative cdc20 protein (CDC20.1);Transducin family protein / WD-40 repeat family protein transcript=eq;prot=eq; - 4 No
AT5G26900 ath Transducin family protein / WD-40 repeat family protein; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat, conserved site (InterPro:IPR019775), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin family protein / WD-40 repeat family protein (TAIR:AT5G27080.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).;Transducin family protein / WD-40 repeat family protein transcript=eq;prot=eq; + 5 No
AT5G27080 ath Transducin family protein / WD-40 repeat family protein; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin family protein / WD-40 repeat family protein (TAIR:AT5G26900.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).;Transducin family protein / WD-40 repeat family protein transcript=eq;prot=eq; - 5 No
AT5G27570 ath Transducin/WD40 repeat-like superfamily protein; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat, conserved site (InterPro:IPR019775), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin family protein / WD-40 repeat family protein (TAIR:AT5G27080.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).;Transducin/WD40 repeat-like superfamily protein transcript=eq;prot=eq; - 5 No
BD3G52490 bdi ubiquitin-protein ligase activity (Blast2GO) pid=Bradi3g52490.1;tid=Bradi3g52490.1;GeneName=Bradi3g52490;transcript=eq;prot=eq + Bd3 No
BD4G20910 bdi ubiquitin-protein ligase activity (Blast2GO) pid=Bradi4g20910.1;tid=Bradi4g20910.1;GeneName=Bradi4g20910;transcript=eq;prot=eq - Bd4 No
BD4G28467 bdi pid=Bradi4g28467.1;tid=Bradi4g28467.1;GeneName=Bradi4g28467;transcript=eq;prot=eq + Bd4 No
BD5G20500 bdi acetyltransferase activity, ubiquitin-protein ligase activity (Blast2GO) pid=Bradi5g20500.1;tid=Bradi5g20500.1;GeneName=Bradi5g20500;transcript=eq;prot=eq + Bd5 No
CP00039G01100 cpa name=evm.TU.supercontig_39.110;pid=evm.TU.supercontig_39.110;prot=eq;transcript=eq - supercontig_39 No
CP01199G00020 cpa name=evm.TU.supercontig_1199.2;pid=evm.TU.supercontig_1199.2;prot=eq;transcript=eq + supercontig_1199 No
CR62G00050 cre name=estExt_gwp_1H.C_250029;pid=130713;prot=eq;tid=130713;transcript=eq + scaffold_62 No
FV7G34220 fve Anaphase-promoting complex subunit cdc20 (similar to) transcript=eq;prot=eq;pid=gene12616 - LG7 No
GM01G43980 gma 01 pid=16246239;transcript=eq;prot=eq;name=Glyma01g43980.1 + Gm01 No
GM03G36300 gma 03 pid=16253524;transcript=eq;prot=eq;name=Glyma03g36300.1 - Gm03 No
GM08G24480 gma 08 pid=16272341;transcript=eq;prot=eq;name=Glyma08g24480.1 + Gm08 No
<< previous
1 | 2 | 3 | 4 next >>

Download genes

Include following columns
gene_id
species
description
comment
strand
chr
outlier