Sub-family  

Parent family
HOM000032
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (3 genes)
ath
Arabidopsis thaliana (3 genes)
bdi
Brachypodium distachyon (3 genes)
cpa
Carica papaya (2 genes)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (3 genes)
gma
Glycine max (7 genes)
lja
Lotus japonicus (3 genes)
mdo
Malus domestica (6 genes)
mes
Manihot esculenta (5 genes)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (2 genes)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (3 genes)
osaindica
Oryza sativa ssp. indica (3 genes)
ppa
Physcomitrella patens (5 genes)
ptr
Populus trichocarpa (4 genes)
rco
Ricinus communis (3 genes)
sbi
Sorghum bicolor (1 gene)
tca
Theobroma cacao (3 genes)
vvi
Vitis vinifera (2 genes)
zma
Zea mays (2 genes)



The gene family ORTHO000345 has 66 genes in 22 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 4, showing 20 records out of 66 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G07000 aly name=Al_scaffold_0001_685;pid=878918;prot=eq;tid=910431 + scaffold_1 No
AL1G09330 aly name=scaffold_101002.1;pid=888208;prot=eq;tid=919721 - scaffold_1 No
AL5G15370 aly name=fgenesh2_kg.5__1047__AT3G46830.1;pid=485055;prot=eq;tid=485055 - scaffold_5 No
AT1G07410 ath RAB GTPase homolog A2B (RABA2b); FUNCTIONS IN: GTP binding, GTPase activity; INVOLVED IN: intracellular protein transport, signal transduction, nucleocytoplasmic transport, protein transport, small GTPase mediated signal transduction; LOCATED IN: endosome, plasma membrane, cell plate; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Ran GTPase (InterPro:IPR002041), ADP-ribosylation factor (InterPro:IPR006688), Ras (InterPro:IPR013753), Ras small GTPase, Ras type (InterPro:IPR003577), Rab11-related (InterPro:IPR015595), Small GTPase, Rho type (InterPro:IPR003578), Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Small GTPase (InterPro:IPR020851), Ras small GTPase, Rab type (InterPro:IPR003579); BEST Arabidopsis thaliana protein match is: RAB GTPase homolog A2D (TAIR:AT5G59150.1); Has 28965 Blast hits to 28914 proteins in 772 species: Archae - 29; Bacteria - 152; Metazoa - 15139; Fungi - 4328; Plants - 3313; Viruses - 20; Other Eukaryotes - 5984 (source: NCBI BLink).;RAB GTPase homolog A2B transcript=eq;prot=eq; + 1 No
AT1G09630 ath Encodes a putative GTP-binding protein. Associates with organelles on a pathway from the Golgi to the plasma membrane in interphase. In dividing cells acts at the cell plate.;RAB GTPase 11C transcript=eq;prot=eq; - 1 No
AT3G46830 ath RAB GTPase homolog A2C (RABA2c); FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; LOCATED IN: endosome, plasma membrane, cell plate; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Small GTPase (InterPro:IPR020851), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579), Rab11-related (InterPro:IPR015595); BEST Arabidopsis thaliana protein match is: RAB GTPase homolog A2D (TAIR:AT5G59150.1); Has 28770 Blast hits to 28717 proteins in 774 species: Archae - 26; Bacteria - 141; Metazoa - 14934; Fungi - 4337; Plants - 3364; Viruses - 20; Other Eukaryotes - 5948 (source: NCBI BLink).;RAB GTPase homolog A2C transcript=eq;prot=eq; - 3 No
BD1G03490 bdi GTPase activity (Blast2GO) pid=Bradi1g03490.1;tid=Bradi1g03490.1;GeneName=Bradi1g03490;transcript=eq;prot=eq + Bd1 No
BD2G39770 bdi GTPase activity (Blast2GO) pid=Bradi2g39770.1;tid=Bradi2g39770.1;GeneName=Bradi2g39770;transcript=eq;prot=eq - Bd2 No
BD2G54950 bdi GTPase activity (Blast2GO) pid=Bradi2g54950.1;tid=Bradi2g54950.1;GeneName=Bradi2g54950;transcript=eq;prot=eq - Bd2 No
CP00081G00600 cpa name=evm.TU.supercontig_81.60;pid=evm.TU.supercontig_81.60;prot=eq;transcript=eq + supercontig_81 No
CP41614G00010 cpa name=evm.TU.contig_41614.1;pid=evm.TU.contig_41614.1;prot=eq;transcript=eq + contig_41614 No
CR03G08470 cre name=SAN_chlre3.14.40.1.1;pid=195519;prot=eq;tid=195519;transcript=eq + chromosome_3 No
FV2G41570 fve Ras-related protein Rab11C (putative) transcript=eq;prot=eq;pid=gene01951 - LG2 No
FV5G26180 fve Ras-related protein RABA2a (similar to) transcript=eq;prot=eq;pid=gene29228 - LG5 No
FV7G28410 fve Ras-related protein Rab2BV (putative) transcript=eq;prot=eq;pid=gene20867 - LG7 No
GM02G41940 gma 02 pid=16249851;transcript=eq;prot=eq;name=Glyma02g41940.1 - Gm02 No
GM11G14360 gma 11 pid=16283865;transcript=eq;prot=eq;name=Glyma11g14360.1 + Gm11 No
GM12G06280 gma 12 pid=16286600;transcript=eq;prot=eq;name=Glyma12g06280.1 + Gm12 No
GM12G28660 gma 12 pid=16288196;transcript=eq;prot=eq;name=Glyma12g28660.1 - Gm12 No
GM14G07040 gma 14 pid=16294656;transcript=eq;prot=eq;name=Glyma14g07040.1 + Gm14 No
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