Sub-family  

Parent family
HOM000283
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (2 genes)
ath
Arabidopsis thaliana (3 genes)
bdi
Brachypodium distachyon (3 genes)
cpa
Carica papaya (2 genes)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (8 genes)
gma
Glycine max (6 genes)
lja
Lotus japonicus (2 genes)
mdo
Malus domestica (7 genes)
mes
Manihot esculenta (4 genes)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (1 gene)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (3 genes)
osaindica
Oryza sativa ssp. indica (3 genes)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (3 genes)
ptr
Populus trichocarpa (4 genes)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (3 genes)
tca
Theobroma cacao (3 genes)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (2 genes)
zma
Zea mays (2 genes)



The gene family ORTHO000325 has 67 genes in 24 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
This page uses the Flash plugin.




Index of genes with 1 constraints:

Page 1 of 4, showing 20 records out of 67 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G02260 aly name=fgenesh1_pm.C_scaffold_1000178;pid=311398;prot=eq;tid=311398 + scaffold_1 No
AL6G38800 aly name=scaffold_604014.1;pid=911957;prot=eq;tid=943470 - scaffold_6 No
AT1G02980 ath encodes an Arabidopsis cullin;cullin 2 transcript=eq;prot=eq; + 1 No
AT1G43140 ath Cullin family protein; FUNCTIONS IN: ubiquitin protein ligase binding; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: endomembrane system, cullin-RING ubiquitin ligase complex; EXPRESSED IN: root, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Cullin homology (InterPro:IPR016158), Cullin protein, neddylation domain (InterPro:IPR019559), Cullin, N-terminal (InterPro:IPR001373), Cullin repeat-like-containing domain (InterPro:IPR016159); BEST Arabidopsis thaliana protein match is: cullin 2 (TAIR:AT1G02980.1); Has 2163 Blast hits to 2131 proteins in 224 species: Archae - 0; Bacteria - 0; Metazoa - 935; Fungi - 457; Plants - 383; Viruses - 0; Other Eukaryotes - 388 (source: NCBI BLink).;Cullin family protein transcript=eq;prot=eq; + 1 No
AT4G02570 ath Encodes a cullin that is a component of SCF ubiquitin ligase complexes involved in mediating responses to auxin and jasmonic acid. Homozygous auxin-resistant mutants arrest growth soon after germination, lacking a root and hypocotyl. Heterozygotes display a variety of phenotypes consistent with impaired auxin response.;cullin 1 transcript=eq;prot=eq; + 4 No
BD2G12970 bdi Cullin, subfamily cullin, putative pid=Bradi2g12970.1;tid=Bradi2g12970.1;GeneName=Bradi2g12970;transcript=eq;prot=eq + Bd2 No
BD2G35820 bdi Cullin, subfamily cullin, putative pid=Bradi2g35820.1;tid=Bradi2g35820.1;GeneName=Bradi2g35820;transcript=eq;prot=eq + Bd2 No
BD2G35830 bdi Cullin, subfamily cullin, putative pid=Bradi2g35830.1;tid=Bradi2g35830.1;GeneName=Bradi2g35830;transcript=eq;prot=eq + Bd2 No
CP00009G01820 cpa name=evm.TU.supercontig_9.182;pid=evm.TU.supercontig_9.182;prot=eq;transcript=eq - supercontig_9 No
CP41778G00010 cpa name=evm.TU.contig_41778.1;pid=evm.TU.contig_41778.1;prot=eq;transcript=eq - contig_41778 No
CR17G08070 cre name=e_gwW.18.30.1;pid=116937;prot=eq;tid=116937;transcript=eq + chromosome_17 No
FV0G45960 fve Cullin-1 (similar to) transcript=eq;prot=eq;pid=gene24917 + scf0513018 No
FV3G24980 fve Cullin-1 (putative) transcript=eq;prot=eq;pid=gene03386 + LG3 No
FV3G24990 fve Cullin-1 (putative) transcript=eq;prot=eq;pid=gene03387 + LG3 No
FV5G32410 fve Cullin-1 (putative) transcript=eq;prot=eq;pid=gene10857 + LG5 No
FV5G32420 fve Cullin-1 (similar to) transcript=eq;prot=eq;pid=gene10858 + LG5 No
FV5G32430 fve Cullin-1 (similar to) transcript=eq;prot=eq;pid=gene10859 + LG5 No
FV5G32460 fve Cullin-1 (putative) transcript=eq;prot=eq;pid=gene10862 + LG5 No
FV5G32500 fve Cullin-1 (putative) transcript=eq;prot=eq;pid=gene10866 + LG5 No
GM03G36960 gma 03 pid=16253600;transcript=eq;prot=eq;name=Glyma03g36960.1 - Gm03 No
<< previous
1 | 2 | 3 | 4 next >>

Download genes

Include following columns
gene_id
species
description
comment
strand
chr
outlier