Sub-family  

Parent family
HOM000498
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (5 genes)
ath
Arabidopsis thaliana (5 genes)
bdi
Brachypodium distachyon (4 genes)
cpa
Carica papaya (3 genes)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (3 genes)
gma
Glycine max (4 genes)
lja
Lotus japonicus (3 genes)
mdo
Malus domestica (5 genes)
mes
Manihot esculenta (3 genes)
mrcc299
Micromonas sp. RCC299 (2 genes)
mtr
Medicago truncatula (9 genes)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (3 genes)
osaindica
Oryza sativa ssp. indica (2 genes)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (2 genes)
ptr
Populus trichocarpa (3 genes)
rco
Ricinus communis (2 genes)
sbi
Sorghum bicolor (2 genes)
smo
Selaginella moellendorffii (2 genes)
tca
Theobroma cacao (2 genes)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (2 genes)
zma
Zea mays (3 genes)



The gene family ORTHO000269 has 73 genes in 25 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 4, showing 20 records out of 73 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G17590 aly name=Al_scaffold_0001_1729;pid=879962;prot=eq;tid=911475 + scaffold_1 No
AL1G50810 aly name=fgenesh1_pg.C_scaffold_1004250;pid=337685;prot=eq;tid=337685 - scaffold_1 No
AL2G15080 aly name=scaffold_201525.1;pid=894451;prot=eq;tid=925964 + scaffold_2 No
AL2G28040 aly name=fgenesh2_kg.2__2199__AT1G79000.1;pid=477069;prot=eq;tid=477069 - scaffold_2 No
AL3G13430 aly name=scaffold_301479.1;pid=897509;prot=eq;tid=929022 + scaffold_3 No
AT1G16710 ath Encodes an enzyme with histone acetyltransferase activity that can use both H3 and H4 histones as substrates. No single prior lysine acetylation is sufficient to block HAC12 acetylation of the H3 or H4 peptides, suggesting that HAC12 can acetylate any of several lysines present in the peptides.;histone acetyltransferase of the CBP family 12 transcript=eq;prot=eq; + 1 No
AT1G55970 ath HAC4 is most likely to be an expressed pseudogene that lacks HAT function. there is a single nucleotide deletion in both the HAC4 genomic and cDNA sequences relative to its homologs. The resulting frameshift within the open reading frame causes a stop codon to occur within the predicted acetyltransferase catalytic domain.;histone acetyltransferase of the CBP family 4 transcript=eq;prot=eq; - 1 No
AT1G67220 ath histone acetyltransferase of the CBP family 2 (HAC2); FUNCTIONS IN: histone acetyltransferase activity, transcription cofactor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: shoot apical meristem, root, flower, leaf; CONTAINS InterPro DOMAIN/s: Histone H3-K56 acetyltransferase, RTT109 (InterPro:IPR013178), Zinc finger, TAZ-type (InterPro:IPR000197), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Zinc finger, ZZ-type (InterPro:IPR000433), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: histone acetyltransferase of the CBP family 1 (TAIR:AT1G79000.1); Has 1838 Blast hits to 1436 proteins in 226 species: Archae - 0; Bacteria - 234; Metazoa - 975; Fungi - 55; Plants - 202; Viruses - 0; Other Eukaryotes - 372 (source: NCBI BLink).;histone acetyltransferase of the CBP family 2 transcript=eq;prot=eq; + 1 No
AT1G79000 ath Homologous to CREB-binding protein, a co-activator of transcription with histone acetyl-transferase activity. No single prior lysine acetylation is sufficient to block HAC1 acetylation of the H3 or H4 peptides, suggesting that HAC1, HAC5, and HAC12 can acetylate any of several lysines present in the peptides. HAM2 acetylates histone H4 lysine 5. A plant line expressing an RNAi construct targeted against HAC1 has reduced rates of agrobacterium-mediated root transformation.;histone acetyltransferase of the CBP family 1 transcript=eq;prot=eq; - 1 No
AT3G12980 ath Encodes an enzyme with histone acetyltransferase activity that can use both H3 and H4 histones as substrates. No single prior lysine acetylation is sufficient to block HAC5 acetylation of the H3 or H4 peptides, suggesting that HAC5 can acetylate any of several lysines present in the peptides. Di-acetylation of both lysines 9 and 14 on the H3 peptide significantly reduces the level of incorporated radioactive acetylation catalyzed by HAC5, indicating that HAC5 may acetylate either lysine 9 or lysine 14.;histone acetyltransferase of the CBP family 5 transcript=eq;prot=eq; + 3 No
BD0G00320 bdi histone acetyltransferase activity (Blast2GO) pid=Bradi0009s00250.2;tid=Bradi0009s00250.2;GeneName=Bradi0009s00250;transcript=eq;prot=eq - scaffold_9 No
BD1G23570 bdi histone acetyltransferase activity (Blast2GO) pid=Bradi1g23570.1;tid=Bradi1g23570.1;GeneName=Bradi1g23570;transcript=eq;prot=eq - Bd1 No
BD1G34530 bdi histone acetyltransferase activity (Blast2GO) pid=Bradi1g34530.1;tid=Bradi1g34530.1;GeneName=Bradi1g34530;transcript=eq;prot=eq - Bd1 No
BD3G03330 bdi histone acetyltransferase activity (Blast2GO) pid=Bradi3g03330.1;tid=Bradi3g03330.1;GeneName=Bradi3g03330;transcript=eq;prot=eq + Bd3 No
CP00010G00150 cpa name=evm.TU.supercontig_10.15;pid=evm.TU.supercontig_10.15;prot=eq;transcript=eq - supercontig_10 No
CP00179G00340 cpa name=evm.TU.supercontig_179.35;pid=evm.TU.supercontig_179.35;prot=eq;transcript=eq - supercontig_179 No
CP00818G00030 cpa name=evm.TU.supercontig_818.3;pid=evm.TU.supercontig_818.3;prot=eq;transcript=eq - supercontig_818 No
CR03G08550 cre name=Chlre2_kg.scaffold_14000095;pid=145462;prot=eq;tid=145462;transcript=eq - chromosome_3 No
FV0G17410 fve Histone acetyltransferase HAC1 (similar to) transcript=eq;prot=eq;pid=gene05506 + scf0513160 No
FV0G27860 fve Histone acetyltransferase HAC12 (probable) transcript=eq;prot=eq;pid=gene16783 + scf0513168 No
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