Sub-family  

Parent family
HOM000309
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (3 genes)
ath
Arabidopsis thaliana (3 genes)
bdi
Brachypodium distachyon (5 genes)
cpa
Carica papaya (1 gene)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (3 genes)
gma
Glycine max (6 genes)
lja
Lotus japonicus (2 genes)
mdo
Malus domestica (3 genes)
mes
Manihot esculenta (3 genes)
mrcc299
Micromonas sp. RCC299 (2 genes)
mtr
Medicago truncatula (2 genes)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (6 genes)
osaindica
Oryza sativa ssp. indica (6 genes)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (6 genes)
ptr
Populus trichocarpa (4 genes)
rco
Ricinus communis (2 genes)
sbi
Sorghum bicolor (4 genes)
tca
Theobroma cacao (2 genes)
vca
Volvox carteri (2 genes)
vvi
Vitis vinifera (2 genes)
zma
Zea mays (5 genes)



The gene family ORTHO000260 has 75 genes in 24 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 4, showing 20 records out of 75 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL5G17810 aly name=fgenesh2_kg.5__1232__AT3G48870.1;pid=485240;prot=eq;tid=485240 - scaffold_5 No
AL8G15080 aly name=fgenesh2_kg.8__972__AT5G50920.1;pid=495156;prot=eq;tid=495156 - scaffold_8 No
AL8G15290 aly name=fgenesh2_kg.8__989__AT5G51070.1;pid=495173;prot=eq;tid=495173 + scaffold_8 No
AT3G48870 ath Encodes a nuclear encoded protein with similarity to Clpa regulatory subunit of CLP protease complex. The protein is localized to the chloroplast stroma. May function redundantly with TIC complex in chloroplast protein import.;Clp ATPase transcript=eq;prot=eq; - 3 No
AT5G50920 ath Encodes a protein that is similar to ATP-dependent Clp protease ATP-binding subunit / ClpC. Involved in protein import into the chloroplast. May provide ATP source that drives the TIC (Translocon at the Inner envelope membrane of Chloroplasts) translocation machinery.;CLPC homologue 1 transcript=eq;prot=eq; - 5 No
AT5G51070 ath ATP-dependent Clp protease regulatory subunit;Clp ATPase transcript=eq;prot=eq; + 5 No
BD3G44340 bdi ATPase activity, coupled (Blast2GO) pid=Bradi3g44340.1;tid=Bradi3g44340.1;GeneName=Bradi3g44340;transcript=eq;prot=eq - Bd3 No
BD3G44640 bdi ATPase activity, coupled (Blast2GO) pid=Bradi3g44640.1;tid=Bradi3g44640.1;GeneName=Bradi3g44640;transcript=eq;prot=eq + Bd3 No
BD4G20470 bdi ATPase activity, coupled (Blast2GO) pid=Bradi4g20470.1;tid=Bradi4g20470.1;GeneName=Bradi4g20470;transcript=eq;prot=eq + Bd4 No
BD4G39880 bdi ATPase activity, coupled (Blast2GO) pid=Bradi4g39880.1;tid=Bradi4g39880.1;GeneName=Bradi4g39880;transcript=eq;prot=eq + Bd4 No
BD5G08920 bdi ATPase activity, coupled (Blast2GO) pid=Bradi5g08920.1;tid=Bradi5g08920.1;GeneName=Bradi5g08920;transcript=eq;prot=eq + Bd5 No
CP00013G01940 cpa name=evm.TU.supercontig_13.194;pid=evm.TU.supercontig_13.194;prot=eq;transcript=eq + supercontig_13 No
CR10G10290 cre name=OVA_CrClpD;pid=195417;prot=eq;tid=195417;transcript=eq - chromosome_10 No
FV0G09090 fve ATP-dependent Clp protease ATP-binding subunit clpC homolog, chloroplastic, Precursor (putative) transcript=eq;prot=eq;pid=gene06436 + scf0513158 No
FV0G34680 fve ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4A, chloroplastic, Precursor (similar to) transcript=eq;prot=eq;pid=gene11821 - scf0513146 No
FV0G34700 fve ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B, chloroplastic, Precursor (similar to) transcript=eq;prot=eq;pid=gene11823 - scf0513146 No
GM04G37740 gma 04 pid=16257083;transcript=eq;prot=eq;name=Glyma04g37740.1 - Gm04 No
GM04G38050 gma 04 pid=16257120;transcript=eq;prot=eq;name=Glyma04g38050.1 + Gm04 No
GM05G38510 gma 05 pid=16261164;transcript=eq;prot=eq;name=Glyma05g38510.1 - Gm05 No
GM06G17020 gma 06 pid=16263227;transcript=eq;prot=eq;name=Glyma06g17020.1 - Gm06 No
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