Sub-family 
- Id
- ORTHO000246
- Method
- BLASTP E_value=1e-05 hits=500 ORTHOMCL I=2
- Sequences
- Parent family
- HOM000967
- Keywords
-
Overview of gene family content
- aly
- Arabidopsis lyrata (3 genes)
- ath
- Arabidopsis thaliana (3 genes)
- bdi
- Brachypodium distachyon (4 genes)
- cpa
- Carica papaya (2 genes)
- cre
- Chlamydomonas reinhardtii (1 gene)
- fve
- Fragaria vesca (2 genes)
- gma
- Glycine max (4 genes)
- lja
- Lotus japonicus (1 gene)
- mdo
- Malus domestica (8 genes)
- mes
- Manihot esculenta (5 genes)
- mrcc299
- Micromonas sp. RCC299 (1 gene)
- mtr
- Medicago truncatula (2 genes)
- olu
- Ostreococcus lucimarinus (1 gene)
- osa
- Oryza sativa ssp. japonica (4 genes)
- osaindica
- Oryza sativa ssp. indica (3 genes)
- ota
- Ostreococcus tauri (1 gene)
- ppa
- Physcomitrella patens (7 genes)
- ptr
- Populus trichocarpa (5 genes)
- rco
- Ricinus communis (3 genes)
- sbi
- Sorghum bicolor (4 genes)
- tca
- Theobroma cacao (5 genes)
- vca
- Volvox carteri (1 gene)
- vvi
- Vitis vinifera (3 genes)
- zma
- Zea mays (3 genes)
The gene family ORTHO000246 has 76 genes in 24 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:
- gene family : ORTHO000246
Page 1 of 4, showing 20 records out of 76 total, starting on record 1, ending on 20
| gene_id | species | description | comment | strand | chr | outlier |
|---|---|---|---|---|---|---|
| AL1G23930 | aly | name=fgenesh2_kg.1__2435__AT1G22410.1;pid=472481;prot=eq;tid=472481 | + | scaffold_1 | No | |
| AL7G02250 | aly | name=scaffold_700232.1;pid=912490;prot=eq;tid=944003 | + | scaffold_7 | No | |
| AL7G07720 | aly | name=fgenesh2_kg.7__768__AT4G33510.1;pid=491335;prot=eq;tid=491335 | - | scaffold_7 | No | |
| AT1G22410 | ath | Class-II DAHP synthetase family protein; FUNCTIONS IN: 3-deoxy-7-phosphoheptulonate synthase activity; INVOLVED IN: aromatic amino acid family biosynthetic process; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: DAHP synthetase, class II (InterPro:IPR002480); BEST Arabidopsis thaliana protein match is: 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase 1 (TAIR:AT4G39980.1); Has 3811 Blast hits to 3796 proteins in 685 species: Archae - 0; Bacteria - 1237; Metazoa - 0; Fungi - 110; Plants - 171; Viruses - 0; Other Eukaryotes - 2293 (source: NCBI BLink).;Class-II DAHP synthetase family protein | transcript=eq;prot=eq; | + | 1 | No |
| AT4G33510 | ath | Enzyme catalyzing the first committed step in aromatic amino acid biosynthesis;3-deoxy-d-arabino-heptulosonate 7-phosphate synthase | transcript=eq;prot=eq; | + | 4 | No |
| AT4G39980 | ath | Encodes a 2-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase, which catalyzes the first committed step in aromatic amino acid biosynthesis. Gene expression is induced by wounding and pathogenic bacteria Pseudomonas syringae.;3-deoxy-D-arabino-heptulosonate 7-phosphate synthase 1 | transcript=eq;prot=eq; | + | 4 | No |
| BD1G21330 | bdi | pid=Bradi1g21330.1;tid=Bradi1g21330.1;GeneName=Bradi1g21330;transcript=eq;prot=eq | - | Bd1 | No | |
| BD1G60750 | bdi | pid=Bradi1g60750.1;tid=Bradi1g60750.1;GeneName=Bradi1g60750;transcript=eq;prot=eq | - | Bd1 | No | |
| BD3G33650 | bdi | pid=Bradi3g33650.1;tid=Bradi3g33650.1;GeneName=Bradi3g33650;transcript=eq;prot=eq | - | Bd3 | No | |
| BD3G38670 | bdi | pid=Bradi3g38670.1;tid=Bradi3g38670.1;GeneName=Bradi3g38670;transcript=eq;prot=eq | - | Bd3 | No | |
| CP00036G01580 | cpa | name=evm.TU.supercontig_36.158;pid=evm.TU.supercontig_36.158;prot=eq;transcript=eq | + | supercontig_36 | No | |
| CP00055G00830 | cpa | name=evm.TU.supercontig_55.83;pid=evm.TU.supercontig_55.83;prot=eq;transcript=eq | - | supercontig_55 | No | |
| CR17G06460 | cre | name=estExt_fgenesh2_pg.C_320158;pid=192517;prot=eq;tid=192517;transcript=eq | - | chromosome_17 | No | |
| FV0G22320 | fve | Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplastic, Precursor (putative) | transcript=eq;prot=eq;pid=gene16261 | - | scf0513168 | No |
| FV5G19610 | fve | Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplastic, Precursor (putative) | transcript=eq;prot=eq;pid=gene11963 | + | LG5 | No |
| GM02G37080 | gma | 02 | pid=16249315;transcript=eq;prot=eq;name=Glyma02g37080.1 | + | Gm02 | No |
| GM06G10670 | gma | 06 | pid=16262455;transcript=eq;prot=eq;name=Glyma06g10670.1 | - | Gm06 | No |
| GM14G35370 | gma | 14 | pid=16296496;transcript=eq;prot=eq;name=Glyma14g35370.1 | + | Gm14 | No |
| GM15G06020 | gma | 15 | pid=16297796;transcript=eq;prot=eq;name=Glyma15g06020.1 | - | Gm15 | No |
| LJ1G002520 | lja | prot=eq;transcript=eq;scaffold=CM0016;name=chr1.CM0016.30.nd | + | chr1 | No |