Sub-family  

Parent family
HOM000499
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (6 genes)
ath
Arabidopsis thaliana (6 genes)
bdi
Brachypodium distachyon (5 genes)
cpa
Carica papaya (3 genes)
fve
Fragaria vesca (3 genes)
gma
Glycine max (12 genes)
lja
Lotus japonicus (1 gene)
mdo
Malus domestica (3 genes)
mes
Manihot esculenta (4 genes)
mtr
Medicago truncatula (2 genes)
osa
Oryza sativa ssp. japonica (4 genes)
osaindica
Oryza sativa ssp. indica (4 genes)
ppa
Physcomitrella patens (4 genes)
ptr
Populus trichocarpa (6 genes)
rco
Ricinus communis (3 genes)
sbi
Sorghum bicolor (5 genes)
smo
Selaginella moellendorffii (2 genes)
tca
Theobroma cacao (3 genes)
vvi
Vitis vinifera (4 genes)
zma
Zea mays (7 genes)



The gene family ORTHO000173 has 87 genes in 20 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 5, showing 20 records out of 87 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G13790 aly name=fgenesh2_kg.1__1424__AT1G13170.1;pid=471470;prot=eq;tid=471470 - scaffold_1 No
AL4G15780 aly name=fgenesh2_kg.4__1086__AT2G31020.1;pid=482026;prot=eq;tid=482026 + scaffold_4 No
AL4G15790 aly name=scaffold_401617.1;pid=902116;prot=eq;tid=933629 + scaffold_4 No
AL6G30320 aly name=fgenesh2_kg.6__2867__AT4G08180.3;pid=489733;prot=eq;tid=489733 + scaffold_6 No
AL6G35720 aly name=fgenesh2_kg.6__3184__AT4G12460.1;pid=490050;prot=eq;tid=490050 + scaffold_6 No
AL7G19720 aly name=fgenesh2_kg.7__2048__AT4G22540.1;pid=492615;prot=eq;tid=492615 + scaffold_7 No
AT1G13170 ath OSBP(oxysterol binding protein)-related protein 1D (ORP1D); FUNCTIONS IN: oxysterol binding; INVOLVED IN: steroid metabolic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pleckstrin homology-type (InterPro:IPR011993), Pleckstrin homology (InterPro:IPR001849), Oxysterol-binding protein (InterPro:IPR000648); BEST Arabidopsis thaliana protein match is: OSBP(oxysterol binding protein)-related protein 1C (TAIR:AT4G08180.1).;OSBP(oxysterol binding protein)-related protein 1D transcript=eq;prot=eq; - 1 No
AT2G31020 ath OSBP(oxysterol binding protein)-related protein 1A (ORP1A); FUNCTIONS IN: oxysterol binding; INVOLVED IN: steroid metabolic process; CONTAINS InterPro DOMAIN/s: Pleckstrin homology-type (InterPro:IPR011993), Oxysterol-binding protein (InterPro:IPR000648), Pleckstrin homology (InterPro:IPR001849); BEST Arabidopsis thaliana protein match is: OSBP(oxysterol binding protein)-related protein 1C (TAIR:AT4G08180.1); Has 2870 Blast hits to 2614 proteins in 228 species: Archae - 2; Bacteria - 10; Metazoa - 1527; Fungi - 710; Plants - 301; Viruses - 8; Other Eukaryotes - 312 (source: NCBI BLink).;OSBP(oxysterol binding protein)-related protein 1A transcript=eq;prot=eq; + 2 No
AT2G31030 ath OSBP(oxysterol binding protein)-related protein 1B (ORP1B); FUNCTIONS IN: oxysterol binding; INVOLVED IN: steroid metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Oxysterol-binding protein (InterPro:IPR000648); BEST Arabidopsis thaliana protein match is: OSBP(oxysterol binding protein)-related protein 1A (TAIR:AT2G31020.1); Has 2291 Blast hits to 2240 proteins in 214 species: Archae - 0; Bacteria - 0; Metazoa - 1139; Fungi - 602; Plants - 285; Viruses - 0; Other Eukaryotes - 265 (source: NCBI BLink).;OSBP(oxysterol binding protein)-related protein 1B transcript=eq;prot=eq; + 2 No
AT4G08180 ath OSBP(oxysterol binding protein)-related protein 1C (ORP1C); FUNCTIONS IN: phosphoinositide binding, oxysterol binding; INVOLVED IN: steroid metabolic process, signal transduction; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Pleckstrin homology-type (InterPro:IPR011993), Oxysterol-binding protein (InterPro:IPR000648), Pleckstrin homology (InterPro:IPR001849); BEST Arabidopsis thaliana protein match is: OSBP(oxysterol binding protein)-related protein 1A (TAIR:AT2G31020.1); Has 2760 Blast hits to 2567 proteins in 218 species: Archae - 0; Bacteria - 4; Metazoa - 1466; Fungi - 697; Plants - 301; Viruses - 0; Other Eukaryotes - 292 (source: NCBI BLink).;OSBP(oxysterol binding protein)-related protein 1C transcript=eq;prot=eq; + 4 No
AT4G12460 ath OSBP(oxysterol binding protein)-related protein 2B (ORP2B); FUNCTIONS IN: oxysterol binding; INVOLVED IN: steroid metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pleckstrin homology-type (InterPro:IPR011993), Oxysterol-binding protein (InterPro:IPR000648), Pleckstrin homology (InterPro:IPR001849); BEST Arabidopsis thaliana protein match is: OSBP(oxysterol binding protein)-related protein 2A (TAIR:AT4G22540.1); Has 2708 Blast hits to 2476 proteins in 219 species: Archae - 0; Bacteria - 2; Metazoa - 1436; Fungi - 690; Plants - 296; Viruses - 0; Other Eukaryotes - 284 (source: NCBI BLink).;OSBP(oxysterol binding protein)-related protein 2B transcript=eq;prot=eq; + 4 No
AT4G22540 ath OSBP(oxysterol binding protein)-related protein 2A (ORP2A); CONTAINS InterPro DOMAIN/s: Pleckstrin homology-type (InterPro:IPR011993), Oxysterol-binding protein (InterPro:IPR000648), Pleckstrin homology (InterPro:IPR001849); BEST Arabidopsis thaliana protein match is: OSBP(oxysterol binding protein)-related protein 2B (TAIR:AT4G12460.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;OSBP(oxysterol binding protein)-related protein 2A transcript=eq;prot=eq; - 4 No
BD1G11027 bdi pid=Bradi1g11027.1;tid=Bradi1g11027.1;GeneName=Bradi1g11027;transcript=eq;prot=eq + Bd1 No
BD1G78320 bdi sterol carrier activity (Blast2GO) pid=Bradi1g78320.1;tid=Bradi1g78320.1;GeneName=Bradi1g78320;transcript=eq;prot=eq + Bd1 No
BD3G16890 bdi sterol carrier activity (Blast2GO) pid=Bradi3g16890.2;tid=Bradi3g16890.2;GeneName=Bradi3g16890;transcript=eq;prot=eq - Bd3 No
BD3G33020 bdi sterol carrier activity (Blast2GO) pid=Bradi3g33020.1;tid=Bradi3g33020.1;GeneName=Bradi3g33020;transcript=eq;prot=eq + Bd3 No
BD4G39060 bdi sterol carrier activity (Blast2GO) pid=Bradi4g39060.1;tid=Bradi4g39060.1;GeneName=Bradi4g39060;transcript=eq;prot=eq + Bd4 No
CP00033G00740 cpa name=evm.TU.supercontig_33.74;pid=evm.TU.supercontig_33.74;prot=eq;transcript=eq - supercontig_33 No
CP00036G00080 cpa name=evm.TU.supercontig_36.8;pid=evm.TU.supercontig_36.8;prot=eq;transcript=eq - supercontig_36 No
CP01025G00010 cpa name=evm.TU.supercontig_1025.1;pid=evm.TU.supercontig_1025.1;prot=eq;transcript=eq - supercontig_1025 No
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