Sub-family  

Parent family
HOM000602
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (5 genes)
ath
Arabidopsis thaliana (6 genes)
bdi
Brachypodium distachyon (2 genes)
cpa
Carica papaya (4 genes)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (4 genes)
gma
Glycine max (8 genes)
lja
Lotus japonicus (1 gene)
mdo
Malus domestica (1 gene)
mes
Manihot esculenta (9 genes)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (10 genes)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (3 genes)
osaindica
Oryza sativa ssp. indica (2 genes)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (4 genes)
ptr
Populus trichocarpa (6 genes)
rco
Ricinus communis (4 genes)
sbi
Sorghum bicolor (1 gene)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (5 genes)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (4 genes)
zma
Zea mays (3 genes)



The gene family ORTHO000169 has 88 genes in 25 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 5, showing 20 records out of 88 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G01880 aly name=scaffold_100205.1;pid=887411;prot=eq;tid=918924 + scaffold_1 No
AL1G08940 aly name=scaffold_100962.1;pid=888168;prot=eq;tid=919681 + scaffold_1 No
AL3G07020 aly name=fgenesh2_kg.3__687__AT3G06720.1;pid=477986;prot=eq;tid=477986 + scaffold_3 No
AL6G39280 aly name=fgenesh2_kg.6__3491__AT4G02150.1;pid=490357;prot=eq;tid=490357 + scaffold_6 No
AL7G27290 aly name=scaffold_702897.1;pid=915155;prot=eq;tid=946668 + scaffold_7 No
AT1G02690 ath Putative importin alpha isoform. When overexpressed can rescue the impa-4 decreased transformation susceptibility phenotype.;importin alpha isoform 6 transcript=eq;prot=eq; + 1 No
AT1G09270 ath Protein interacts with Agrobacterium proteins VirD2 and VirE2.;importin alpha isoform 4 transcript=eq;prot=eq; + 1 No
AT3G06720 ath Encodes importin alpha involved in nuclear import. Protein interacts with Agrobacterium proteins VirD2 and VirE2. Is not individually essential for Agrobacterium-mediated root transformation, but when overexpressed can rescue the impa-4 decreased transformation susceptibility phenotype.;importin alpha isoform 1 transcript=eq;prot=eq; + 3 No
AT4G02150 ath Encodes IMPORTIN ALPHA 3. Mutant plants act as suppressors of snc1 response and salicylic acid accumulation. Located in the nucleus. Involved in protein import. Protein interacts with Agrobacterium proteins VirD2 and VirE2. Is not individually essential for Agrobacterium-mediated root transformation, but when overexpressed can rescue the impa-4 decreased transformation susceptibility phenotype.;ARM repeat superfamily protein transcript=eq;prot=eq; - 4 No
AT4G16143 ath Protein interacts with Agrobacterium proteins VirD2 and VirE2. Is not individually essential for Agrobacterium-mediated root transformation, but when overexpressed can rescue the impa-4 decreased transformation susceptibility phenotype.;importin alpha isoform 2 transcript=eq;prot=eq; - 4 No
AT5G49310 ath Putative importin alpha isoform. When overexpressed can rescue the impa-4 decreased transformation susceptibility phenotype.;importin alpha isoform 5 transcript=eq;prot=eq; - 5 No
BD2G08960 bdi GTP binding (Blast2GO) pid=Bradi2g08960.1;tid=Bradi2g08960.1;GeneName=Bradi2g08960;transcript=eq;prot=eq + Bd2 No
BD2G35050 bdi GTP binding (Blast2GO) pid=Bradi2g35050.1;tid=Bradi2g35050.1;GeneName=Bradi2g35050;transcript=eq;prot=eq + Bd2 No
CP00009G00950 cpa name=evm.TU.supercontig_9.95;pid=evm.TU.supercontig_9.95;prot=eq;transcript=eq + supercontig_9 No
CP00048G01310 cpa name=evm.TU.supercontig_48.131;pid=evm.TU.supercontig_48.131;prot=eq;transcript=eq - supercontig_48 No
CP00048G01740 cpa name=evm.TU.supercontig_48.174;pid=evm.TU.supercontig_48.174;prot=eq;transcript=eq - supercontig_48 No
CP00151G00560 cpa name=evm.TU.supercontig_151.56;pid=evm.TU.supercontig_151.56;prot=eq;transcript=eq - supercontig_151 No
CR04G00770 cre name=estExt_gwp_1W.C_400053;pid=139246;prot=eq;tid=139246;transcript=eq - chromosome_4 No
FV3G39890 fve Importin subunit alpha-1 (KAP alpha) (putative) transcript=eq;prot=eq;pid=gene05174 + LG3 No
FV6G02080 fve Importin subunit alpha-1 (KAP alpha) (putative) transcript=eq;prot=eq;pid=gene31556 + LG6 No
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