Sub-family  

Parent family
HOM000031
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (5 genes)
ath
Arabidopsis thaliana (5 genes)
bdi
Brachypodium distachyon (7 genes)
cpa
Carica papaya (3 genes)
fve
Fragaria vesca (6 genes)
gma
Glycine max (12 genes)
lja
Lotus japonicus (2 genes)
mdo
Malus domestica (3 genes)
mes
Manihot esculenta (5 genes)
mtr
Medicago truncatula (1 gene)
osa
Oryza sativa ssp. japonica (6 genes)
osaindica
Oryza sativa ssp. indica (5 genes)
ppa
Physcomitrella patens (1 gene)
ptr
Populus trichocarpa (6 genes)
rco
Ricinus communis (3 genes)
sbi
Sorghum bicolor (4 genes)
smo
Selaginella moellendorffii (3 genes)
tca
Theobroma cacao (5 genes)
vvi
Vitis vinifera (3 genes)
zma
Zea mays (4 genes)



The gene family ORTHO000164 has 89 genes in 20 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 5, showing 20 records out of 89 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL2G03310 aly name=fgenesh2_kg.2__254__AT1G62200.1;pid=475124;prot=eq;tid=475124 + scaffold_2 No
AL5G01150 aly name=scaffold_500127.1;pid=904423;prot=eq;tid=935936 + scaffold_5 No
AL5G01180 aly name=fgenesh2_kg.5__119__AT2G02040.1;pid=484127;prot=eq;tid=484127 + scaffold_5 No
AL5G24200 aly name=fgenesh2_kg.5__1803__AT3G54140.1;pid=485811;prot=eq;tid=485811 - scaffold_5 No
AL6G00960 aly name=fgenesh1_pm.C_scaffold_6000081;pid=324861;prot=eq;tid=324861 + scaffold_6 No
AT1G62200 ath Major facilitator superfamily protein; FUNCTIONS IN: transporter activity; INVOLVED IN: oligopeptide transport; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: PTR2 family proton/oligopeptide symporter, conserved site (InterPro:IPR018456), Oligopeptide transporter (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: peptide transporter 2 (TAIR:AT2G02040.1); Has 8090 Blast hits to 7669 proteins in 1476 species: Archae - 0; Bacteria - 3978; Metazoa - 789; Fungi - 491; Plants - 2227; Viruses - 0; Other Eukaryotes - 605 (source: NCBI BLink).;Major facilitator superfamily protein transcript=eq;prot=eq; - 1 No
AT2G02020 ath Major facilitator superfamily protein; FUNCTIONS IN: transporter activity; INVOLVED IN: oligopeptide transport; LOCATED IN: membrane; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: LP.06 six leaves visible; CONTAINS InterPro DOMAIN/s: PTR2 family proton/oligopeptide symporter, conserved site (InterPro:IPR018456), Oligopeptide transporter (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: peptide transporter 2 (TAIR:AT2G02040.1); Has 8051 Blast hits to 7680 proteins in 1472 species: Archae - 0; Bacteria - 4049; Metazoa - 790; Fungi - 469; Plants - 2161; Viruses - 0; Other Eukaryotes - 582 (source: NCBI BLink).;Major facilitator superfamily protein transcript=eq;prot=eq; + 2 No
AT2G02040 ath Encodes a di- and tri-peptide transporter that recognizes a variety of different amino acid combinations. Expression of the transcripts for this gene can be detected in the embryo through in situ hybridization. This protein does not have nitrate transporter activity based on oocyte transport assays.;peptide transporter 2 transcript=eq;prot=eq; + 2 No
AT3G54140 ath Encodes a di- and tri-peptide transporter that recognizes a variety of different amino acid combinations. GFP-tagged PTR1 localizes to the plasma membrane and has 8 to 11 predicted transmembrane domains. PTR1 is expressed in a number of different vascular tissues throughout the plant based on promoter:GUS expression analysis. ptr1 mutants have a lower dry weight than wild type plants when both are grown with Pro-Ala or Ala-Ala dipeptides as their nitrogen source, suggesting that PTR1 plays a role in dipeptide uptake in the roots. Furthermore N content of ptr1 mutants is lower than that of wild type plants when grown with Pro-Ala or a mixture of dipeptides as nitrogen source;peptide transporter 1 transcript=eq;prot=eq; - 3 No
AT5G01180 ath Encodes a dipeptide transporter expressed in pollen and ovules during early seed development. GFP-tagged PTR5 localizes to the plasma membrane.;peptide transporter 5 transcript=eq;prot=eq; - 5 No
BD1G10490 bdi L-histidine transmembrane transporter activity (Blast2GO) pid=Bradi1g10490.1;tid=Bradi1g10490.1;GeneName=Bradi1g10490;transcript=eq;prot=eq + Bd1 No
BD1G59840 bdi proton-dependent oligopeptide secondary active transmembrane transporter activity (Blast2GO) pid=Bradi1g59840.1;tid=Bradi1g59840.1;GeneName=Bradi1g59840;transcript=eq;prot=eq - Bd1 No
BD1G68820 bdi pid=Bradi1g68820.2;tid=Bradi1g68820.2;GeneName=Bradi1g68820;transcript=eq;prot=eq + Bd1 No
BD1G68830 bdi proton-dependent oligopeptide secondary active transmembrane transporter activity (Blast2GO) pid=Bradi1g68830.1;tid=Bradi1g68830.1;GeneName=Bradi1g68830;transcript=eq;prot=eq + Bd1 No
BD1G68837 bdi pid=Bradi1g68837.1;tid=Bradi1g68837.1;GeneName=Bradi1g68837;transcript=eq;prot=eq + Bd1 No
BD1G68860 bdi dipeptide transporter activity, symporter activity (Blast2GO) pid=Bradi1g68860.2;tid=Bradi1g68860.2;GeneName=Bradi1g68860;transcript=eq;prot=eq + Bd1 No
BD2G02822 bdi pid=Bradi2g02822.1;tid=Bradi2g02822.1;GeneName=Bradi2g02822;transcript=eq;prot=eq - Bd2 No
CP00056G00980 cpa name=evm.TU.supercontig_56.98;pid=evm.TU.supercontig_56.98;prot=eq;transcript=eq - supercontig_56 No
CP00056G00990 cpa name=evm.TU.supercontig_56.99;pid=evm.TU.supercontig_56.99;prot=eq;transcript=eq - supercontig_56 No
CP00112G00570 cpa name=evm.TU.supercontig_112.58;pid=evm.TU.supercontig_112.58;prot=eq;transcript=eq + supercontig_112 No
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