Sub-family 
- Id
- ORTHO000138
- Method
- BLASTP E_value=1e-05 hits=500 ORTHOMCL I=2
- Sequences
- Parent family
- HOM000661
- Keywords
-
Overview of gene family content
- aly
- Arabidopsis lyrata (3 genes)
- ath
- Arabidopsis thaliana (3 genes)
- bdi
- Brachypodium distachyon (1 gene)
- cpa
- Carica papaya (2 genes)
- cre
- Chlamydomonas reinhardtii (1 gene)
- fve
- Fragaria vesca (10 genes)
- gma
- Glycine max (10 genes)
- lja
- Lotus japonicus (2 genes)
- mdo
- Malus domestica (23 genes)
- mes
- Manihot esculenta (5 genes)
- mrcc299
- Micromonas sp. RCC299 (1 gene)
- mtr
- Medicago truncatula (1 gene)
- olu
- Ostreococcus lucimarinus (1 gene)
- osa
- Oryza sativa ssp. japonica (2 genes)
- osaindica
- Oryza sativa ssp. indica (2 genes)
- ota
- Ostreococcus tauri (1 gene)
- ppa
- Physcomitrella patens (1 gene)
- ptr
- Populus trichocarpa (6 genes)
- rco
- Ricinus communis (5 genes)
- sbi
- Sorghum bicolor (1 gene)
- tca
- Theobroma cacao (7 genes)
- vca
- Volvox carteri (1 gene)
- vvi
- Vitis vinifera (5 genes)
- zma
- Zea mays (2 genes)
The gene family ORTHO000138 has 96 genes in 24 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:
- gene family : ORTHO000138
Page 1 of 5, showing 20 records out of 96 total, starting on record 1, ending on 20
| gene_id | species | description | comment | strand | chr | outlier |
|---|---|---|---|---|---|---|
| AL2G07140 | aly | name=fgenesh2_kg.2__519__AT1G58440.1;pid=475389;prot=eq;tid=475389 | + | scaffold_2 | No | |
| AL4G02310 | aly | name=Al_scaffold_0004_231;pid=868068;prot=eq;tid=899581 | - | scaffold_4 | No | |
| AL7G02850 | aly | name=fgenesh2_kg.7__273__AT4G37760.1;pid=490840;prot=eq;tid=490840 | - | scaffold_7 | No | |
| AT1G58440 | ath | Encodes a putative protein that has been speculated, based on sequence similarities, to have squalene monooxygenase activity.;FAD/NAD(P)-binding oxidoreductase family protein | transcript=eq;prot=eq; | - | 1 | No |
| AT2G22830 | ath | squalene epoxidase 2 (SQE2); FUNCTIONS IN: squalene monooxygenase activity, electron carrier activity, oxidoreductase activity, FAD binding; INVOLVED IN: sterol biosynthetic process; LOCATED IN: integral to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Squalene epoxidase (InterPro:IPR013698), Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal (InterPro:IPR003953); BEST Arabidopsis thaliana protein match is: squalene epoxidase 3 (TAIR:AT4G37760.1); Has 2838 Blast hits to 2834 proteins in 830 species: Archae - 46; Bacteria - 1617; Metazoa - 134; Fungi - 223; Plants - 197; Viruses - 0; Other Eukaryotes - 621 (source: NCBI BLink).;squalene epoxidase 2 | transcript=eq;prot=eq; | - | 2 | No |
| AT4G37760 | ath | squalene epoxidase 3 (SQE3); FUNCTIONS IN: squalene monooxygenase activity; INVOLVED IN: response to jasmonic acid stimulus, response to wounding, sterol biosynthetic process; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Squalene epoxidase (InterPro:IPR013698), Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal (InterPro:IPR003953); BEST Arabidopsis thaliana protein match is: squalene epoxidase 2 (TAIR:AT2G22830.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;squalene epoxidase 3 | transcript=eq;prot=eq; | + | 4 | No |
| BD1G69170 | bdi | FAD binding (Blast2GO) | pid=Bradi1g69170.1;tid=Bradi1g69170.1;GeneName=Bradi1g69170;transcript=eq;prot=eq | - | Bd1 | No |
| CP00129G00670 | cpa | name=evm.TU.supercontig_129.67;pid=evm.TU.supercontig_129.67;prot=eq;transcript=eq | - | supercontig_129 | No | |
| CP00160G00270 | cpa | name=evm.TU.supercontig_160.27;pid=evm.TU.supercontig_160.27;prot=eq;transcript=eq | - | supercontig_160 | No | |
| CR15G02260 | cre | name=estExt_fgenesh1_pm.C_chromosome_150063;pid=381157;prot=eq;tid=381164;transcript=eq | + | chromosome_15 | No | |
| FV0G20040 | fve | Squalene monooxygenase (SE) (similar to) | transcript=eq;prot=eq;pid=gene05647 | + | scf0513160 | No |
| FV0G22440 | fve | Squalene monooxygenase (SE) (putative) | transcript=eq;prot=eq;pid=gene16270 | - | scf0513168 | No |
| FV2G02930 | fve | Squalene monooxygenase (SE) (putative) | transcript=eq;prot=eq;pid=gene24690 | + | LG2 | No |
| FV2G02940 | fve | Squalene monooxygenase (SE) (putative) | transcript=eq;prot=eq;pid=gene24691 | - | LG2 | No |
| FV2G02950 | fve | Squalene monooxygenase (SE) (similar to) | transcript=eq;prot=eq;pid=gene24692 | + | LG2 | No |
| FV2G03030 | fve | Squalene monooxygenase (SE) (putative) | transcript=eq;prot=eq;pid=gene24700 | + | LG2 | No |
| FV2G03040 | fve | Squalene monooxygenase (SE) (putative) | transcript=eq;prot=eq;pid=gene24701 | + | LG2 | No |
| FV2G32190 | fve | Squalene monooxygenase (SE) (similar to) | transcript=eq;prot=eq;pid=gene02638 | + | LG2 | No |
| FV4G16150 | fve | Squalene monooxygenase (SE) (similar to) | transcript=eq;prot=eq;pid=gene06144 | - | LG4 | No |
| FV4G16160 | fve | Squalene monooxygenase (SE) (similar to) | transcript=eq;prot=eq;pid=gene06145 | + | LG4 | No |