Sub-family  

Parent family
HOM000309
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (9 genes)
ath
Arabidopsis thaliana (4 genes)
bdi
Brachypodium distachyon (4 genes)
cpa
Carica papaya (4 genes)
cre
Chlamydomonas reinhardtii (2 genes)
fve
Fragaria vesca (4 genes)
gma
Glycine max (9 genes)
lja
Lotus japonicus (3 genes)
mdo
Malus domestica (8 genes)
mes
Manihot esculenta (4 genes)
mrcc299
Micromonas sp. RCC299 (2 genes)
mtr
Medicago truncatula (4 genes)
olu
Ostreococcus lucimarinus (3 genes)
osa
Oryza sativa ssp. japonica (3 genes)
osaindica
Oryza sativa ssp. indica (3 genes)
ota
Ostreococcus tauri (2 genes)
ppa
Physcomitrella patens (3 genes)
ptr
Populus trichocarpa (5 genes)
rco
Ricinus communis (3 genes)
sbi
Sorghum bicolor (4 genes)
smo
Selaginella moellendorffii (3 genes)
tca
Theobroma cacao (3 genes)
vca
Volvox carteri (6 genes)
vvi
Vitis vinifera (3 genes)
zma
Zea mays (4 genes)



The gene family ORTHO000121 has 102 genes in 25 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 6, showing 20 records out of 102 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G19570 aly name=scaffold_102080.1;pid=889286;prot=eq;tid=920799 - scaffold_1 No
AL2G23210 aly name=fgenesh2_kg.2__1695__AT1G74310.1;pid=476565;prot=eq;tid=476565 - scaffold_2 No
AL4G05940 aly name=fgenesh1_pg.C_scaffold_4000440;pid=344098;prot=eq;tid=344098 + scaffold_4 No
AL4G05950 aly name=scaffold_400611.1;pid=901110;prot=eq;tid=932623 + scaffold_4 No
AL4G05960 aly name=scaffold_400612.1;pid=901111;prot=eq;tid=932624 + scaffold_4 No
AL4G06100 aly name=Al_scaffold_0004_581;pid=868418;prot=eq;tid=899931 - scaffold_4 No
AL6G15270 aly name=scaffold_601573.1;pid=909516;prot=eq;tid=941029 - scaffold_6 No
AL7G29490 aly name=scaffold_703127.1;pid=915385;prot=eq;tid=946898 - scaffold_7 No
AL7G29520 aly name=fgenesh2_kg.7__2872__AT4G14670.1;pid=493439;prot=eq;tid=493439 - scaffold_7 No
AT1G74310 ath Encodes ClpB1, which belongs to the Casein lytic proteinase/heat shock protein 100 (Clp/Hsp100) family. Involved in refolding of proteins which form aggregates under heat stress. Also known as AtHsp101. AtHsp101 is a cytosolic heat shock protein required for acclimation to high temperature.;heat shock protein 101 transcript=eq;prot=eq; - 1 No
AT2G25140 ath Encodes ClpB4, which belongs to the Casein lytic proteinase/heat shock protein 100 (Clp/Hsp100) family. Targeted to the mitochondrion, also referred to as ClpB-m. Transcripts of ClpB4 accumulate dramatically at high temperatures, suggesting that it may be involved in response to heat stress.;casein lytic proteinase B4 transcript=eq;prot=eq; - 2 No
AT4G14670 ath This locus was originally annotated as encoding ClpB2 (also referred to as Hsp92.7), which belongs to the Casein lytic proteinase/heat shock protein 100 (Clp/Hsp100) family. However, according to Lee et al. (2007, Plant Journal, 49:115-127), there is no evidence for expression of an appropriate-sized mRNA from this locus. Re-annotation of the genome indicates that this locus potentially encodes a 68.8-kDa protein, containing only the N-terminal two thirds of the originally predicted open reading frame. This locus contains a 626-bp deletion in WS ecotype compared with the Col ecotype, which eliminates residues 1-86 of the predicted protein.;casein lytic proteinase B2 transcript=eq;prot=eq; + 4 No
AT5G15450 ath Encodes a chloroplast-targeted Hsp101 homologue. Functions as a molecular chaperone involved in plastid differentiation mediating internal thylakoid membrane formation and conferring thermotolerance to chloroplasts during heat stress. APG6 is constitutively expressed in the root tips, the organ boundary region, the reproductive tissues of mature plants where plastids exist as proplastids, and slightly in the stems and leaves. APG6 expression is upregulated in response to heat shock in various organs, but not in response to other abiotic stresses. Apg6 mutants have a pale-green phenotype.;casein lytic proteinase B3 transcript=eq;prot=eq; - 5 No
BD1G16190 bdi ADP binding, ATP binding (Blast2GO) pid=Bradi1g16190.1;tid=Bradi1g16190.1;GeneName=Bradi1g16190;transcript=eq;prot=eq - Bd1 No
BD2G19540 bdi Heat shock protein 101 pid=Bradi2g19540.1;tid=Bradi2g19540.1;GeneName=Bradi2g19540;transcript=eq;prot=eq + Bd2 No
BD2G49660 bdi Heat shock protein 101 pid=Bradi2g49660.1;tid=Bradi2g49660.1;GeneName=Bradi2g49660;transcript=eq;prot=eq + Bd2 No
BD3G06107 bdi pid=Bradi3g06107.1;tid=Bradi3g06107.1;GeneName=Bradi3g06107;transcript=eq;prot=eq - Bd3 No
CP00014G01500 cpa name=evm.TU.supercontig_14.150;pid=evm.TU.supercontig_14.150;prot=eq;transcript=eq - supercontig_14 No
CP00014G01510 cpa name=evm.TU.supercontig_14.151;pid=evm.TU.supercontig_14.151;prot=eq;transcript=eq - supercontig_14 No
CP00094G00290 cpa name=evm.TU.supercontig_94.29;pid=evm.TU.supercontig_94.29;prot=eq;transcript=eq + supercontig_94 No
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