Sub-family  

Parent family
HOM000723
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (7 genes)
ath
Arabidopsis thaliana (7 genes)
bdi
Brachypodium distachyon (3 genes)
cpa
Carica papaya (6 genes)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (5 genes)
gma
Glycine max (11 genes)
lja
Lotus japonicus (2 genes)
mdo
Malus domestica (9 genes)
mes
Manihot esculenta (8 genes)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (7 genes)
osa
Oryza sativa ssp. japonica (3 genes)
osaindica
Oryza sativa ssp. indica (4 genes)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (2 genes)
ptr
Populus trichocarpa (10 genes)
rco
Ricinus communis (7 genes)
sbi
Sorghum bicolor (2 genes)
smo
Selaginella moellendorffii (2 genes)
tca
Theobroma cacao (6 genes)
vvi
Vitis vinifera (6 genes)
zma
Zea mays (5 genes)



The gene family ORTHO000099 has 115 genes in 23 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 6, showing 20 records out of 115 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G16310 aly name=fgenesh1_pg.C_scaffold_1001397;pid=334832;prot=eq;tid=334832 - scaffold_1 No
AL2G23660 aly name=fgenesh1_pm.C_scaffold_2001449;pid=316416;prot=eq;tid=316416 + scaffold_2 No
AL3G06650 aly name=fgenesh2_kg.3__651__AT3G06450.1;pid=477950;prot=eq;tid=477950 - scaffold_3 No
AL4G35370 aly name=fgenesh2_kg.4__2951__AT2G47160.1;pid=483891;prot=eq;tid=483891 - scaffold_4 No
AL5G33340 aly name=fgenesh2_kg.5__2725__AT3G62270.1;pid=486733;prot=eq;tid=486733 - scaffold_5 No
AL6G25620 aly name=fgenesh1_pm.C_scaffold_6002032;pid=326812;prot=eq;tid=326812 + scaffold_6 No
AL7G08960 aly name=Al_scaffold_0007_844;pid=857345;prot=eq;tid=888858 + scaffold_7 No
AT1G15460 ath Encodes a efflux-type boron transporter. Over-expression improved plant growth under B toxic conditions.;HCO3- transporter family transcript=eq;prot=eq; - 1 No
AT1G74810 ath BOR5; FUNCTIONS IN: anion exchanger activity; INVOLVED IN: anion transport; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Bicarbonate transporter, eukaryotic (InterPro:IPR003020), Bicarbonate transporter, C-terminal (InterPro:IPR011531); BEST Arabidopsis thaliana protein match is: HCO3- transporter family (TAIR:AT1G15460.1); Has 2579 Blast hits to 1402 proteins in 194 species: Archae - 0; Bacteria - 4; Metazoa - 1942; Fungi - 299; Plants - 229; Viruses - 2; Other Eukaryotes - 103 (source: NCBI BLink).;HCO3- transporter family transcript=eq;prot=eq; + 1 No
AT2G47160 ath Boron transporter. Protein accumulates in shoots and roots under conditions of boron deficiency and is degraded within several hours of restoring boron supply. Localized to the plasma membrane under B limitation, and to the cytoplasm after B application before degradation. Protein is transferred via the endosomes to the vacuole for degradation. Localized to the inner plasma membrane domain in the columella, lateral root cap, epidermis, and endodermis in the root tip region, and in the epidermis and endodermis in the elongation zone. Under high-boron is transported to the vacuole for degradation.;HCO3- transporter family transcript=eq;prot=eq; - 2 No
AT3G06450 ath HCO3- transporter family; FUNCTIONS IN: anion exchanger activity; INVOLVED IN: anion transport; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Bicarbonate transporter, eukaryotic (InterPro:IPR003020), Bicarbonate transporter, C-terminal (InterPro:IPR011531); BEST Arabidopsis thaliana protein match is: HCO3- transporter family (TAIR:AT3G62270.1); Has 2674 Blast hits to 1402 proteins in 195 species: Archae - 0; Bacteria - 4; Metazoa - 2029; Fungi - 304; Plants - 228; Viruses - 2; Other Eukaryotes - 107 (source: NCBI BLink).;HCO3- transporter family transcript=eq;prot=eq; - 3 No
AT3G62270 ath HCO3- transporter family; FUNCTIONS IN: anion exchanger activity; INVOLVED IN: anion transport; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Bicarbonate transporter, eukaryotic (InterPro:IPR003020), Bicarbonate transporter, C-terminal (InterPro:IPR011531); BEST Arabidopsis thaliana protein match is: HCO3- transporter family (TAIR:AT2G47160.1); Has 2572 Blast hits to 1412 proteins in 199 species: Archae - 0; Bacteria - 14; Metazoa - 1904; Fungi - 316; Plants - 231; Viruses - 2; Other Eukaryotes - 105 (source: NCBI BLink).;HCO3- transporter family transcript=eq;prot=eq; - 3 No
AT4G32510 ath HCO3- transporter family; FUNCTIONS IN: anion exchanger activity; INVOLVED IN: anion transport; LOCATED IN: integral to membrane, membrane; CONTAINS InterPro DOMAIN/s: Bicarbonate transporter, C-terminal (InterPro:IPR011531), Bicarbonate transporter, eukaryotic (InterPro:IPR003020); BEST Arabidopsis thaliana protein match is: HCO3- transporter family (TAIR:AT5G25430.1); Has 2374 Blast hits to 1394 proteins in 189 species: Archae - 0; Bacteria - 4; Metazoa - 1794; Fungi - 254; Plants - 226; Viruses - 1; Other Eukaryotes - 95 (source: NCBI BLink).;HCO3- transporter family transcript=eq;prot=eq; - 4 No
AT5G25430 ath HCO3- transporter family; FUNCTIONS IN: anion exchanger activity; INVOLVED IN: anion transport; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: sepal, male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Bicarbonate transporter, eukaryotic (InterPro:IPR003020), Bicarbonate transporter, C-terminal (InterPro:IPR011531); BEST Arabidopsis thaliana protein match is: HCO3- transporter family (TAIR:AT4G32510.1); Has 2636 Blast hits to 1421 proteins in 197 species: Archae - 0; Bacteria - 18; Metazoa - 1993; Fungi - 285; Plants - 221; Viruses - 2; Other Eukaryotes - 117 (source: NCBI BLink).;HCO3- transporter family transcript=eq;prot=eq; + 5 No
BD2G04690 bdi inorganic anion exchanger activity (Blast2GO) pid=Bradi2g04690.3;tid=Bradi2g04690.3;GeneName=Bradi2g04690;transcript=eq;prot=eq - Bd2 No
BD2G34110 bdi inorganic anion exchanger activity (Blast2GO) pid=Bradi2g34110.1;tid=Bradi2g34110.1;GeneName=Bradi2g34110;transcript=eq;prot=eq + Bd2 No
BD4G04420 bdi inorganic anion exchanger activity (Blast2GO) pid=Bradi4g04420.1;tid=Bradi4g04420.1;GeneName=Bradi4g04420;transcript=eq;prot=eq - Bd4 No
CP00010G01810 cpa name=evm.TU.supercontig_10.181;pid=evm.TU.supercontig_10.181;prot=eq;transcript=eq - supercontig_10 No
CP00067G00840 cpa name=evm.TU.supercontig_67.85;pid=evm.TU.supercontig_67.85;prot=eq;transcript=eq - supercontig_67 No
CP00076G00410 cpa name=evm.TU.supercontig_76.41;pid=evm.TU.supercontig_76.41;prot=eq;transcript=eq - supercontig_76 No
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