Sub-family 
- Id
- ORTHO000073
- Method
- BLASTP E_value=1e-05 hits=500 ORTHOMCL I=2
- Sequences
- Parent family
- HOM000200
- Keywords
-
Overview of gene family content
- aly
- Arabidopsis lyrata (3 genes)
- ath
- Arabidopsis thaliana (3 genes)
- bdi
- Brachypodium distachyon (9 genes)
- cpa
- Carica papaya (4 genes)
- cre
- Chlamydomonas reinhardtii (1 gene)
- fve
- Fragaria vesca (5 genes)
- gma
- Glycine max (12 genes)
- lja
- Lotus japonicus (2 genes)
- mdo
- Malus domestica (8 genes)
- mes
- Manihot esculenta (6 genes)
- mrcc299
- Micromonas sp. RCC299 (1 gene)
- mtr
- Medicago truncatula (3 genes)
- osa
- Oryza sativa ssp. japonica (12 genes)
- osaindica
- Oryza sativa ssp. indica (11 genes)
- ppa
- Physcomitrella patens (3 genes)
- ptr
- Populus trichocarpa (7 genes)
- rco
- Ricinus communis (4 genes)
- sbi
- Sorghum bicolor (12 genes)
- smo
- Selaginella moellendorffii (4 genes)
- tca
- Theobroma cacao (6 genes)
- vca
- Volvox carteri (1 gene)
- vvi
- Vitis vinifera (6 genes)
- zma
- Zea mays (13 genes)
The gene family ORTHO000073 has 136 genes in 23 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:
- gene family : ORTHO000073
Page 1 of 7, showing 20 records out of 136 total, starting on record 1, ending on 20
gene_id | species | description | comment | strand | chr | outlier |
---|---|---|---|---|---|---|
AL1G42040 | aly | name=fgenesh2_kg.1__3931__AT1G48410.2;pid=473977;prot=eq;tid=473977 | - | scaffold_1 | No | |
AL4G12250 | aly | name=fgenesh2_kg.4__778__AT2G27880.1;pid=481718;prot=eq;tid=481718 | - | scaffold_4 | No | |
AL8G06220 | aly | name=scaffold_800659.1;pid=917259;prot=eq;tid=948772 | - | scaffold_8 | No | |
AT1G48410 | ath | Encodes an RNA Slicer that selectively recruits microRNAs and siRNAs. There is currently no evidence that AGO1 Slicer is in a high molecular weight RNA-induced silencing complex (RISC). Mutants are defective in post-transcriptional gene silencing and have pleiotropic developmental and morphological defects. Through its action on the regulation of ARF17 expression, the protein regulates genes involved at the cross talk between auxin and light signaling during adventitious root development. AGO1 seems to be targeted for degradation by silencing suppressor F-box-containing proteins from Turnip yellow virus and Cucurbit aphid-borne yellow virus.;Stabilizer of iron transporter SufD / Polynucleotidyl transferase | transcript=eq;prot=eq; | - | 1 | No |
AT2G27880 | ath | ARGONAUTE 5 (AGO5); FUNCTIONS IN: nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Domain of unknown function DUF1785 (InterPro:IPR014811), Stem cell self-renewal protein Piwi (InterPro:IPR003165), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), Argonaute/Dicer protein, PAZ (InterPro:IPR003100); BEST Arabidopsis thaliana protein match is: Stabilizer of iron transporter SufD / Polynucleotidyl transferase (TAIR:AT1G48410.1); Has 2539 Blast hits to 2399 proteins in 280 species: Archae - 0; Bacteria - 80; Metazoa - 1295; Fungi - 341; Plants - 581; Viruses - 6; Other Eukaryotes - 236 (source: NCBI BLink).;Argonaute family protein | transcript=eq;prot=eq; | + | 2 | No |
AT5G43810 | ath | Encodes a member of the EIF2C (elongation initiation factor 2c)/ Argonaute class of proteins. Required to establish the central-peripheral organization of the embryo apex. Along with WUS and CLV genes, controls the relative organization of central zone and peripheral zone cells in meristems. Acts in embryonic provascular tissue potentiating WUSCHEL function during meristem development in the embryo.;Stabilizer of iron transporter SufD / Polynucleotidyl transferase | transcript=eq;prot=eq; | + | 5 | No |
BD1G05162 | bdi | pid=Bradi1g05162.1;tid=Bradi1g05162.1;GeneName=Bradi1g05162;transcript=eq;prot=eq | + | Bd1 | No | |
BD1G12430 | bdi | Argonaute (AGO) Family, subfamily AGO5-like | pid=Bradi1g12430.1;tid=Bradi1g12430.1;GeneName=Bradi1g12430;Name=BdAGO5c;transcript=eq;prot=eq | + | Bd1 | No |
BD1G28260 | bdi | Argonaute (AGO) Family, subfamily Monocot-AGO1-like | pid=Bradi1g28260.1;tid=Bradi1g28260.1;GeneName=Bradi1g28260;Name=BdAGO11;transcript=eq;prot=eq | - | Bd1 | No |
BD1G29577 | bdi | pid=Bradi1g29577.1;tid=Bradi1g29577.1;GeneName=Bradi1g29577;transcript=eq;prot=eq | - | Bd1 | No | |
BD1G36907 | bdi | pid=Bradi1g36907.1;tid=Bradi1g36907.1;GeneName=Bradi1g36907;transcript=eq;prot=eq | - | Bd1 | No | |
BD1G54977 | bdi | pid=Bradi1g54977.1;tid=Bradi1g54977.1;GeneName=Bradi1g54977;transcript=eq;prot=eq | + | Bd1 | No | |
BD3G51077 | bdi | pid=Bradi3g51077.1;tid=Bradi3g51077.1;GeneName=Bradi3g51077;transcript=eq;prot=eq | + | Bd3 | No | |
BD3G60697 | bdi | pid=Bradi3g60697.1;tid=Bradi3g60697.1;GeneName=Bradi3g60697;transcript=eq;prot=eq | - | Bd3 | No | |
BD5G18540 | bdi | Argonaute (AGO) Family, subfamily AGO1-like | pid=Bradi5g18540.1;tid=Bradi5g18540.1;GeneName=Bradi5g18540;Name=BdAGO1b;transcript=eq;prot=eq | - | Bd5 | No |
CP00044G01280 | cpa | name=evm.TU.supercontig_44.128;pid=evm.TU.supercontig_44.128;prot=eq;transcript=eq | - | supercontig_44 | No | |
CP00047G00310 | cpa | name=evm.TU.supercontig_47.31;pid=evm.TU.supercontig_47.31;prot=eq;transcript=eq | - | supercontig_47 | No | |
CP00075G00840 | cpa | name=evm.TU.supercontig_75.84;pid=evm.TU.supercontig_75.84;prot=eq;transcript=eq | - | supercontig_75 | No | |
CP01673G00020 | cpa | name=evm.TU.supercontig_1673.2;pid=evm.TU.supercontig_1673.2;prot=eq;transcript=eq | + | supercontig_1673 | No | |
CR01G14890 | cre | name=fgenesh1_pg.C_scaffold_42000029;pid=18730;prot=eq;tid=18730;transcript=eq | + | chromosome_1 | No |