Sub-family  

Parent family
HOM000200
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (3 genes)
ath
Arabidopsis thaliana (3 genes)
bdi
Brachypodium distachyon (9 genes)
cpa
Carica papaya (4 genes)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (5 genes)
gma
Glycine max (12 genes)
lja
Lotus japonicus (2 genes)
mdo
Malus domestica (8 genes)
mes
Manihot esculenta (6 genes)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (3 genes)
osa
Oryza sativa ssp. japonica (12 genes)
osaindica
Oryza sativa ssp. indica (11 genes)
ppa
Physcomitrella patens (3 genes)
ptr
Populus trichocarpa (7 genes)
rco
Ricinus communis (4 genes)
sbi
Sorghum bicolor (12 genes)
smo
Selaginella moellendorffii (4 genes)
tca
Theobroma cacao (6 genes)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (6 genes)
zma
Zea mays (13 genes)



The gene family ORTHO000073 has 136 genes in 23 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 7, showing 20 records out of 136 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G42040 aly name=fgenesh2_kg.1__3931__AT1G48410.2;pid=473977;prot=eq;tid=473977 - scaffold_1 No
AL4G12250 aly name=fgenesh2_kg.4__778__AT2G27880.1;pid=481718;prot=eq;tid=481718 - scaffold_4 No
AL8G06220 aly name=scaffold_800659.1;pid=917259;prot=eq;tid=948772 - scaffold_8 No
AT1G48410 ath Encodes an RNA Slicer that selectively recruits microRNAs and siRNAs. There is currently no evidence that AGO1 Slicer is in a high molecular weight RNA-induced silencing complex (RISC). Mutants are defective in post-transcriptional gene silencing and have pleiotropic developmental and morphological defects. Through its action on the regulation of ARF17 expression, the protein regulates genes involved at the cross talk between auxin and light signaling during adventitious root development. AGO1 seems to be targeted for degradation by silencing suppressor F-box-containing proteins from Turnip yellow virus and Cucurbit aphid-borne yellow virus.;Stabilizer of iron transporter SufD / Polynucleotidyl transferase transcript=eq;prot=eq; - 1 No
AT2G27880 ath ARGONAUTE 5 (AGO5); FUNCTIONS IN: nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Domain of unknown function DUF1785 (InterPro:IPR014811), Stem cell self-renewal protein Piwi (InterPro:IPR003165), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), Argonaute/Dicer protein, PAZ (InterPro:IPR003100); BEST Arabidopsis thaliana protein match is: Stabilizer of iron transporter SufD / Polynucleotidyl transferase (TAIR:AT1G48410.1); Has 2539 Blast hits to 2399 proteins in 280 species: Archae - 0; Bacteria - 80; Metazoa - 1295; Fungi - 341; Plants - 581; Viruses - 6; Other Eukaryotes - 236 (source: NCBI BLink).;Argonaute family protein transcript=eq;prot=eq; + 2 No
AT5G43810 ath Encodes a member of the EIF2C (elongation initiation factor 2c)/ Argonaute class of proteins. Required to establish the central-peripheral organization of the embryo apex. Along with WUS and CLV genes, controls the relative organization of central zone and peripheral zone cells in meristems. Acts in embryonic provascular tissue potentiating WUSCHEL function during meristem development in the embryo.;Stabilizer of iron transporter SufD / Polynucleotidyl transferase transcript=eq;prot=eq; + 5 No
BD1G05162 bdi pid=Bradi1g05162.1;tid=Bradi1g05162.1;GeneName=Bradi1g05162;transcript=eq;prot=eq + Bd1 No
BD1G12430 bdi Argonaute (AGO) Family, subfamily AGO5-like pid=Bradi1g12430.1;tid=Bradi1g12430.1;GeneName=Bradi1g12430;Name=BdAGO5c;transcript=eq;prot=eq + Bd1 No
BD1G28260 bdi Argonaute (AGO) Family, subfamily Monocot-AGO1-like pid=Bradi1g28260.1;tid=Bradi1g28260.1;GeneName=Bradi1g28260;Name=BdAGO11;transcript=eq;prot=eq - Bd1 No
BD1G29577 bdi pid=Bradi1g29577.1;tid=Bradi1g29577.1;GeneName=Bradi1g29577;transcript=eq;prot=eq - Bd1 No
BD1G36907 bdi pid=Bradi1g36907.1;tid=Bradi1g36907.1;GeneName=Bradi1g36907;transcript=eq;prot=eq - Bd1 No
BD1G54977 bdi pid=Bradi1g54977.1;tid=Bradi1g54977.1;GeneName=Bradi1g54977;transcript=eq;prot=eq + Bd1 No
BD3G51077 bdi pid=Bradi3g51077.1;tid=Bradi3g51077.1;GeneName=Bradi3g51077;transcript=eq;prot=eq + Bd3 No
BD3G60697 bdi pid=Bradi3g60697.1;tid=Bradi3g60697.1;GeneName=Bradi3g60697;transcript=eq;prot=eq - Bd3 No
BD5G18540 bdi Argonaute (AGO) Family, subfamily AGO1-like pid=Bradi5g18540.1;tid=Bradi5g18540.1;GeneName=Bradi5g18540;Name=BdAGO1b;transcript=eq;prot=eq - Bd5 No
CP00044G01280 cpa name=evm.TU.supercontig_44.128;pid=evm.TU.supercontig_44.128;prot=eq;transcript=eq - supercontig_44 No
CP00047G00310 cpa name=evm.TU.supercontig_47.31;pid=evm.TU.supercontig_47.31;prot=eq;transcript=eq - supercontig_47 No
CP00075G00840 cpa name=evm.TU.supercontig_75.84;pid=evm.TU.supercontig_75.84;prot=eq;transcript=eq - supercontig_75 No
CP01673G00020 cpa name=evm.TU.supercontig_1673.2;pid=evm.TU.supercontig_1673.2;prot=eq;transcript=eq + supercontig_1673 No
CR01G14890 cre name=fgenesh1_pg.C_scaffold_42000029;pid=18730;prot=eq;tid=18730;transcript=eq + chromosome_1 No
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