Sub-family  

Parent family
HOM000291
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (15 genes)
ath
Arabidopsis thaliana (17 genes)
bdi
Brachypodium distachyon (6 genes)
cpa
Carica papaya (5 genes)
fve
Fragaria vesca (6 genes)
gma
Glycine max (16 genes)
lja
Lotus japonicus (5 genes)
mdo
Malus domestica (12 genes)
mes
Manihot esculenta (8 genes)
mtr
Medicago truncatula (4 genes)
osa
Oryza sativa ssp. japonica (8 genes)
osaindica
Oryza sativa ssp. indica (6 genes)
ppa
Physcomitrella patens (1 gene)
ptr
Populus trichocarpa (9 genes)
rco
Ricinus communis (5 genes)
sbi
Sorghum bicolor (7 genes)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (11 genes)
vvi
Vitis vinifera (5 genes)
zma
Zea mays (8 genes)



The gene family ORTHO000053 has 155 genes in 20 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 8, showing 20 records out of 155 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G24930 aly name=fgenesh2_kg.1__2527__AT1G23160.1;pid=472573;prot=eq;tid=472573 + scaffold_1 No
AL1G29270 aly name=fgenesh2_kg.1__2974__AT1G28130.1;pid=473020;prot=eq;tid=473020 + scaffold_1 No
AL1G42370 aly name=fgenesh2_kg.1__3961__AT1G48660.1;pid=474007;prot=eq;tid=474007 - scaffold_1 No
AL2G06940 aly name=fgenesh2_kg.2__494__AT4G37390.1;pid=475364;prot=eq;tid=475364 + scaffold_2 No
AL3G34640 aly name=fgenesh2_kg.3__3080__AT2G14960.1;pid=480379;prot=eq;tid=480379 - scaffold_3 No
AL4G02800 aly name=fgenesh2_kg.4__248__AT2G23170.1;pid=481188;prot=eq;tid=481188 - scaffold_4 No
AL4G35940 aly name=fgenesh2_kg.4__3016__AT2G47750.1;pid=483956;prot=eq;tid=483956 - scaffold_4 No
AL6G13050 aly name=fgenesh2_kg.6__1284__AT5G13320.1;pid=488150;prot=eq;tid=488150 + scaffold_6 No
AL6G13080 aly name=fgenesh2_kg.6__1287__AT5G13350.1;pid=488153;prot=eq;tid=488153 + scaffold_6 No
AL6G13090 aly name=fgenesh2_kg.6__1288__AT5G13360.1;pid=488154;prot=eq;tid=488154 + scaffold_6 No
AL6G13100 aly name=scaffold_601348.1;pid=909291;prot=eq;tid=940804 + scaffold_6 No
AL6G13110 aly name=fgenesh2_kg.6__1291__AT5G13380.1;pid=488157;prot=eq;tid=488157 + scaffold_6 No
AL7G03300 aly name=fgenesh2_kg.7__315__AT1G59500.1;pid=490882;prot=eq;tid=490882 - scaffold_7 No
AL7G14750 aly name=fgenesh2_kg.7__1505__AT4G27260.1;pid=492072;prot=eq;tid=492072 - scaffold_7 No
AL8G19780 aly name=scaffold_801981.1;pid=918581;prot=eq;tid=950094 - scaffold_8 No
AT1G23160 ath Auxin-responsive GH3 family protein; CONTAINS InterPro DOMAIN/s: GH3 auxin-responsive promoter (InterPro:IPR004993); BEST Arabidopsis thaliana protein match is: Auxin-responsive GH3 family protein (TAIR:AT5G13320.1); Has 1394 Blast hits to 1308 proteins in 220 species: Archae - 0; Bacteria - 431; Metazoa - 54; Fungi - 2; Plants - 672; Viruses - 0; Other Eukaryotes - 235 (source: NCBI BLink).;Auxin-responsive GH3 family protein transcript=eq;prot=eq; + 1 No
AT1G28130 ath encodes an IAA-amido synthase that conjugates Asp and other amino acids to auxin in vitro. Lines carrying insertions in this gene are hypersensitive to auxin.;Auxin-responsive GH3 family protein transcript=eq;prot=eq; + 1 No
AT1G48660 ath Auxin-responsive GH3 family protein; CONTAINS InterPro DOMAIN/s: GH3 auxin-responsive promoter (InterPro:IPR004993); BEST Arabidopsis thaliana protein match is: auxin-responsive GH3 family protein (TAIR:AT1G48670.1); Has 1415 Blast hits to 1338 proteins in 229 species: Archae - 0; Bacteria - 452; Metazoa - 52; Fungi - 2; Plants - 674; Viruses - 0; Other Eukaryotes - 235 (source: NCBI BLink).;Auxin-responsive GH3 family protein transcript=eq;prot=eq; - 1 No
AT1G48670 ath auxin-responsive GH3 family protein; CONTAINS InterPro DOMAIN/s: GH3 auxin-responsive promoter (InterPro:IPR004993); BEST Arabidopsis thaliana protein match is: Auxin-responsive GH3 family protein (TAIR:AT1G48660.1); Has 1327 Blast hits to 1306 proteins in 228 species: Archae - 0; Bacteria - 396; Metazoa - 53; Fungi - 2; Plants - 668; Viruses - 0; Other Eukaryotes - 208 (source: NCBI BLink).;auxin-responsive GH3 family protein transcript=eq;prot=eq; - 1 No
AT1G59500 ath encodes an IAA-amido synthase that conjugates Asp and other amino acids to auxin in vitro.;Auxin-responsive GH3 family protein transcript=eq;prot=eq; - 1 No
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