Sub-family  

Parent family
HOM000179
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (11 genes)
ath
Arabidopsis thaliana (9 genes)
bdi
Brachypodium distachyon (8 genes)
cpa
Carica papaya (5 genes)
fve
Fragaria vesca (6 genes)
gma
Glycine max (18 genes)
lja
Lotus japonicus (4 genes)
mdo
Malus domestica (14 genes)
mes
Manihot esculenta (10 genes)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (4 genes)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (10 genes)
osaindica
Oryza sativa ssp. indica (8 genes)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (7 genes)
ptr
Populus trichocarpa (8 genes)
rco
Ricinus communis (3 genes)
sbi
Sorghum bicolor (7 genes)
smo
Selaginella moellendorffii (2 genes)
tca
Theobroma cacao (7 genes)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (3 genes)
zma
Zea mays (11 genes)



The gene family ORTHO000050 has 159 genes in 24 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 8, showing 20 records out of 159 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G43140 aly name=fgenesh2_kg.1__4019__AT1G49240.1;pid=474065;prot=eq;tid=474065 + scaffold_1 No
AL3G12570 aly name=fgenesh2_kg.3__1268__AT3G12110.1;pid=478567;prot=eq;tid=478567 + scaffold_3 No
AL3G20380 aly name=fgenesh1_pg.C_scaffold_3001782;pid=342019;prot=eq;tid=342019 + scaffold_3 No
AL4G23370 aly name=fgenesh1_pm.C_scaffold_4001519;pid=321462;prot=eq;tid=321462 + scaffold_4 No
AL4G23430 aly name=fgenesh1_pm.C_scaffold_4001522;pid=321465;prot=eq;tid=321465 + scaffold_4 No
AL4G29280 aly name=scaffold_403057.1;pid=903556;prot=eq;tid=935069 + scaffold_4 No
AL4G29290 aly name=fgenesh1_pg.C_scaffold_4002350;pid=346008;prot=eq;tid=346008 + scaffold_4 No
AL5G14950 aly name=fgenesh2_kg.5__1015__AT3G46520.1;pid=485023;prot=eq;tid=485023 + scaffold_5 No
AL5G23800 aly name=fgenesh1_pm.C_scaffold_5001458;pid=323914;prot=eq;tid=323914 + scaffold_5 No
AL6G09470 aly name=fgenesh2_kg.6__937__AT5G09810.1;pid=487803;prot=eq;tid=487803 + scaffold_6 No
AL8G25530 aly name=fgenesh2_kg.8__1881__AT5G59370.1;pid=496065;prot=eq;tid=496065 + scaffold_8 No
AT1G49240 ath Member of a subclass of actins composed of ACT2 and ACT8. Its mRNA is strongly expressed in strongly expressed in leaves, roots, stems, flowers, pollen, and siliques. However, protein expression, assayed by a ACT8:GUS fusion reporter, is very low in pollen.;actin 8 transcript=eq;prot=eq; + 1 No
AT2G37620 ath Member of the actin gene family. Expressed in mature pollen.;actin 1 transcript=eq;prot=eq; + 2 No
AT2G42100 ath Actin-like ATPase superfamily protein; FUNCTIONS IN: structural constituent of cytoskeleton, ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: actin cytoskeleton; CONTAINS InterPro DOMAIN/s: Actin, conserved site (InterPro:IPR004001), Actin/actin-like (InterPro:IPR004000), Actin/actin-like conserved site (InterPro:IPR020902); BEST Arabidopsis thaliana protein match is: actin-11 (TAIR:AT3G12110.1); Has 15158 Blast hits to 14731 proteins in 3038 species: Archae - 6; Bacteria - 6; Metazoa - 5717; Fungi - 5232; Plants - 1603; Viruses - 2; Other Eukaryotes - 2592 (source: NCBI BLink).;Actin-like ATPase superfamily protein transcript=eq;prot=eq; + 2 No
AT3G12110 ath Encodes an actin that is expressed predominantly during reproductive development.;actin-11 transcript=eq;prot=eq; + 3 No
AT3G18780 ath Encodes an actin that is constitutively expressed in vegetative structures but not pollen. ACT2 is involved in tip growth of root hairs.;actin 2 transcript=eq;prot=eq; + 3 No
AT3G46520 ath Member of actin subclass composed of ACT12 and ACT4. RNA is expressed at very low levels in vegetative organs, low levels in flowers and very high levels in pollen. Expression of an ACT12/GUS fusion was found in vascular tissues, tapetum, developing and mature pollen, the root cap and in a ring of pericycle tissues during lateral root initiation and early development.;actin-12 transcript=eq;prot=eq; + 3 No
AT3G53750 ath Member of the Actin gene family. Expressed in mature pollen.;actin 3 transcript=eq;prot=eq; + 3 No
AT5G09810 ath Member of Actin gene family.Mutants are defective in germination and root growth.;actin 7 transcript=eq;prot=eq; + 5 No
AT5G59370 ath Encodes one of eight Arabidopsis actins. ACT4 belongs to the reproductive actin subclass which is predominantly expressed in developing and reproductive tissues, such as pollen, pollen tubes, ovules, and developing seeds. Expression of the ACT4/GUS fusion was restricted to young vascular tissues, tapetum, and developing and mature pollen.;actin 4 transcript=eq;prot=eq; + 5 No
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