Sub-family  

Parent family
HOM000181
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (6 genes)
ath
Arabidopsis thaliana (6 genes)
bdi
Brachypodium distachyon (10 genes)
cpa
Carica papaya (11 genes)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (13 genes)
gma
Glycine max (41 genes)
lja
Lotus japonicus (10 genes)
mdo
Malus domestica (26 genes)
mes
Manihot esculenta (17 genes)
mtr
Medicago truncatula (25 genes)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (13 genes)
osaindica
Oryza sativa ssp. indica (14 genes)
ppa
Physcomitrella patens (10 genes)
ptr
Populus trichocarpa (19 genes)
rco
Ricinus communis (12 genes)
sbi
Sorghum bicolor (10 genes)
smo
Selaginella moellendorffii (6 genes)
tca
Theobroma cacao (15 genes)
vca
Volvox carteri (4 genes)
vvi
Vitis vinifera (12 genes)
zma
Zea mays (12 genes)



The gene family ORTHO000011 has 294 genes in 23 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 15, showing 20 records out of 294 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G18330 aly name=fgenesh2_kg.1__1901__AT1G17420.1;pid=471947;prot=eq;tid=471947 + scaffold_1 No
AL1G52190 aly name=fgenesh2_kg.1__4730__AT1G55020.1;pid=474776;prot=eq;tid=474776 + scaffold_1 No
AL2G15530 aly name=fgenesh2_kg.2__989__AT1G67560.1;pid=475859;prot=eq;tid=475859 + scaffold_2 No
AL2G21330 aly name=fgenesh2_kg.2__1515__AT1G72520.1;pid=476385;prot=eq;tid=476385 + scaffold_2 No
AL3G24710 aly name=fgenesh2_kg.3__2453__AT3G22400.1;pid=479752;prot=eq;tid=479752 + scaffold_3 No
AL5G13180 aly name=fgenesh2_kg.5__899__AT3G45140.1;pid=484907;prot=eq;tid=484907 + scaffold_5 No
AT1G17420 ath Lipoxygenase;lipoxygenase 3 transcript=eq;prot=eq; + 1 No
AT1G55020 ath lipoxygenase, a defense gene conferring resistance Xanthomonas campestris;lipoxygenase 1 transcript=eq;prot=eq; + 1 No
AT1G67560 ath PLAT/LH2 domain-containing lipoxygenase family protein; FUNCTIONS IN: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen, lipoxygenase activity, iron ion binding, metal ion binding; INVOLVED IN: oxidation reduction, growth; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lipoxygenase, iron binding site (InterPro:IPR020833), Lipoxygenase, C-terminal (InterPro:IPR013819), Lipoxygenase, LH2 (InterPro:IPR001024), Lipase/lipooxygenase, PLAT/LH2 (InterPro:IPR008976), Lipoxygenase, conserved site (InterPro:IPR020834), Lipoxygenase (InterPro:IPR000907), Lipoxygenase, plant (InterPro:IPR001246); BEST Arabidopsis thaliana protein match is: PLAT/LH2 domain-containing lipoxygenase family protein (TAIR:AT1G72520.1); Has 1467 Blast hits to 1431 proteins in 179 species: Archae - 0; Bacteria - 76; Metazoa - 533; Fungi - 48; Plants - 781; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink).;PLAT/LH2 domain-containing lipoxygenase family protein transcript=eq;prot=eq; + 1 No
AT1G72520 ath PLAT/LH2 domain-containing lipoxygenase family protein; FUNCTIONS IN: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen, lipoxygenase activity, iron ion binding, metal ion binding; INVOLVED IN: growth, jasmonic acid biosynthetic process, response to wounding, defense response; LOCATED IN: chloroplast; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Lipoxygenase, iron binding site (InterPro:IPR020833), Lipoxygenase, C-terminal (InterPro:IPR013819), Lipoxygenase, LH2 (InterPro:IPR001024), Lipase/lipooxygenase, PLAT/LH2 (InterPro:IPR008976), Lipoxygenase, conserved site (InterPro:IPR020834), Lipoxygenase (InterPro:IPR000907), Lipoxygenase, plant (InterPro:IPR001246); BEST Arabidopsis thaliana protein match is: lipoxygenase 3 (TAIR:AT1G17420.1); Has 1471 Blast hits to 1433 proteins in 182 species: Archae - 0; Bacteria - 79; Metazoa - 528; Fungi - 49; Plants - 786; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink).;PLAT/LH2 domain-containing lipoxygenase family protein transcript=eq;prot=eq; + 1 No
AT3G22400 ath LOX5; FUNCTIONS IN: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen, lipoxygenase activity, iron ion binding, metal ion binding; INVOLVED IN: root development; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lipoxygenase, LH2 (InterPro:IPR001024), Lipoxygenase, iron binding site (InterPro:IPR020833), Lipase/lipooxygenase, PLAT/LH2 (InterPro:IPR008976), Lipoxygenase, conserved site (InterPro:IPR020834), Lipoxygenase, C-terminal (InterPro:IPR013819), Lipoxygenase, plant (InterPro:IPR001246); BEST Arabidopsis thaliana protein match is: lipoxygenase 1 (TAIR:AT1G55020.1); Has 1471 Blast hits to 1435 proteins in 177 species: Archae - 0; Bacteria - 82; Metazoa - 527; Fungi - 46; Plants - 787; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink).;PLAT/LH2 domain-containing lipoxygenase family protein transcript=eq;prot=eq; + 3 No
AT3G45140 ath Chloroplast lipoxygenase required for wound-induced jasmonic acid accumulation in Arabidopsis.Mutants are resistant to Staphylococcus aureus and accumulate salicylic acid upon infection.;lipoxygenase 2 transcript=eq;prot=eq; + 3 No
BD1G09260 bdi iron ion binding, lipoxygenase activity (Blast2GO) pid=Bradi1g09260.1;tid=Bradi1g09260.1;GeneName=Bradi1g09260;transcript=eq;prot=eq - Bd1 No
BD1G09270 bdi iron ion binding, lipoxygenase activity (Blast2GO) pid=Bradi1g09270.1;tid=Bradi1g09270.1;GeneName=Bradi1g09270;transcript=eq;prot=eq - Bd1 No
BD1G11670 bdi iron ion binding, lipoxygenase activity (Blast2GO) pid=Bradi1g11670.1;tid=Bradi1g11670.1;GeneName=Bradi1g11670;transcript=eq;prot=eq - Bd1 No
BD1G11680 bdi iron ion binding, lipoxygenase activity (Blast2GO) pid=Bradi1g11680.1;tid=Bradi1g11680.1;GeneName=Bradi1g11680;transcript=eq;prot=eq - Bd1 No
BD1G72690 bdi iron ion binding, lipoxygenase activity (Blast2GO) pid=Bradi1g72690.1;tid=Bradi1g72690.1;GeneName=Bradi1g72690;transcript=eq;prot=eq - Bd1 No
BD3G07000 bdi iron ion binding, lipoxygenase activity (Blast2GO) pid=Bradi3g07000.2;tid=Bradi3g07000.2;GeneName=Bradi3g07000;transcript=eq;prot=eq - Bd3 No
BD3G07010 bdi iron ion binding, lipoxygenase activity (Blast2GO) pid=Bradi3g07010.1;tid=Bradi3g07010.1;GeneName=Bradi3g07010;transcript=eq;prot=eq - Bd3 No
BD3G39980 bdi inorganic diphosphatase activity (Blast2GO) pid=Bradi3g39980.1;tid=Bradi3g39980.1;GeneName=Bradi3g39980;transcript=eq;prot=eq + Bd3 No
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