Sub-family  

Parent family
HOM000006
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (12 genes)
ath
Arabidopsis thaliana (7 genes)
bdi
Brachypodium distachyon (9 genes)
cpa
Carica papaya (9 genes)
fve
Fragaria vesca (29 genes)
gma
Glycine max (62 genes)
lja
Lotus japonicus (10 genes)
mdo
Malus domestica (43 genes)
mes
Manihot esculenta (29 genes)
mtr
Medicago truncatula (34 genes)
osa
Oryza sativa ssp. japonica (7 genes)
osaindica
Oryza sativa ssp. indica (8 genes)
ptr
Populus trichocarpa (66 genes)
rco
Ricinus communis (18 genes)
sbi
Sorghum bicolor (11 genes)
tca
Theobroma cacao (36 genes)
vvi
Vitis vinifera (12 genes)
zma
Zea mays (9 genes)



The gene family ORTHO000002 has 411 genes in 18 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
This page uses the Flash plugin.




Index of genes with 1 constraints:

Page 1 of 21, showing 20 records out of 411 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G11580 aly name=fgenesh2_kg.1__1224__AT1G11340.1;pid=471270;prot=eq;tid=471270 - scaffold_1 No
AL1G11660 aly name=fgenesh2_kg.1__1233__AT1G11410.1;pid=471279;prot=eq;tid=471279 + scaffold_1 No
AL2G12420 aly name=fgenesh2_kg.2__816__AT1G65790.1;pid=475686;prot=eq;tid=475686 + scaffold_2 No
AL2G12430 aly name=Al_scaffold_0002_1120;pid=876526;prot=eq;tid=908039 + scaffold_2 No
AL4G35280 aly name=Al_scaffold_0004_3412;pid=871249;prot=eq;tid=902762 + scaffold_4 No
AL7G14710 aly name=fgenesh2_kg.7__1501__AT4G27300.1;pid=492068;prot=eq;tid=492068 + scaffold_7 No
AL7G14720 aly name=Al_scaffold_0007_1412;pid=857913;prot=eq;tid=889426 - scaffold_7 No
AL7G21310 aly name=scaffold_702281.1;pid=914539;prot=eq;tid=946052 + scaffold_7 No
AL7G21330 aly name=Al_scaffold_0007_2039;pid=858540;prot=eq;tid=890053 - scaffold_7 No
AL7G38310 aly name=Al_scaffold_0007_3719;pid=860220;prot=eq;tid=891733 + scaffold_7 No
AL7G38950 aly name=Al_scaffold_0007_3777;pid=860278;prot=eq;tid=891791 - scaffold_7 No
AL7G39070 aly name=Al_scaffold_0007_3790;pid=860291;prot=eq;tid=891804 - scaffold_7 No
AT1G11340 ath S-locus lectin protein kinase family protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: protein amino acid phosphorylation, recognition of pollen; LOCATED IN: endomembrane system; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Curculin-like (mannose-binding) lectin (InterPro:IPR001480), PAN-2 domain (InterPro:IPR013227), Apple-like (InterPro:IPR003609), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), EGF-like, type 3 (InterPro:IPR000742), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), S-locus glycoprotein (InterPro:IPR000858), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: S-locus lectin protein kinase family protein (TAIR:AT1G11410.1); Has 123060 Blast hits to 121063 proteins in 4656 species: Archae - 122; Bacteria - 13729; Metazoa - 45275; Fungi - 10148; Plants - 35343; Viruses - 433; Other Eukaryotes - 18010 (source: NCBI BLink).;S-locus lectin protein kinase family protein transcript=eq;prot=eq; - 1 No
AT1G11410 ath S-locus lectin protein kinase family protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: protein amino acid phosphorylation, recognition of pollen; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Curculin-like (mannose-binding) lectin (InterPro:IPR001480), Apple-like (InterPro:IPR003609), PAN-2 domain (InterPro:IPR013227), S-locus receptor kinase, C-terminal (InterPro:IPR021820), Serine/threonine-protein kinase domain (InterPro:IPR002290), EGF-like, type 3 (InterPro:IPR000742), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), S-locus glycoprotein (InterPro:IPR000858), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635), Concanavalin A-like lectin/glucanase (InterPro:IPR008985); BEST Arabidopsis thaliana protein match is: S-locus lectin protein kinase family protein (TAIR:AT1G11340.1); Has 122302 Blast hits to 120413 proteins in 4701 species: Archae - 118; Bacteria - 13948; Metazoa - 44921; Fungi - 9999; Plants - 35002; Viruses - 441; Other Eukaryotes - 17873 (source: NCBI BLink).;S-locus lectin protein kinase family protein transcript=eq;prot=eq; + 1 No
AT1G65790 ath An alternatively spliced gene that encodes a functional transmembrane receptor serine/threonine kinase, alternate form may not have transmembrane domain.;receptor kinase 1 transcript=eq;prot=eq; + 1 No
AT1G65800 ath encodes a putative receptor-like serine/threonine protein kinases that is similar to brassica self-incompatibility (S) locus. expressed in specifically in cotyledons, leaves, and sepals, in correlation with the maturation of these structures.;receptor kinase 2 transcript=eq;prot=eq; + 1 No
AT4G21380 ath encodes a putative receptor-like serine/threonine protein kinases that is similar to Brassica self-incompatibility (S) locus. Expressed in root. Shoot expression limited to limited to the root-hypocotyl transition zone and at the base of lateral roots as well as in axillary buds, and pedicels.;receptor kinase 3 transcript=eq;prot=eq; - 4 No
AT4G27290 ath S-locus lectin protein kinase family protein; FUNCTIONS IN: sugar binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation, recognition of pollen; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Curculin-like (mannose-binding) lectin (InterPro:IPR001480), Apple-like (InterPro:IPR003609), PAN-2 domain (InterPro:IPR013227), Serine/threonine-protein kinase domain (InterPro:IPR002290), EGF-like, type 3 (InterPro:IPR000742), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), S-locus glycoprotein (InterPro:IPR000858), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: receptor kinase 3 (TAIR:AT4G21380.1); Has 125077 Blast hits to 123040 proteins in 4681 species: Archae - 101; Bacteria - 14188; Metazoa - 45583; Fungi - 10059; Plants - 36201; Viruses - 449; Other Eukaryotes - 18496 (source: NCBI BLink).;S-locus lectin protein kinase family protein transcript=eq;prot=eq; + 4 No
AT4G27300 ath S-locus lectin protein kinase family protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: protein amino acid phosphorylation, recognition of pollen; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Curculin-like (mannose-binding) lectin (InterPro:IPR001480), PAN-2 domain (InterPro:IPR013227), Apple-like (InterPro:IPR003609), Protein kinase, catalytic domain (InterPro:IPR000719), S-locus glycoprotein (InterPro:IPR000858), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: S-locus lectin protein kinase family protein (TAIR:AT4G27290.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).;S-locus lectin protein kinase family protein transcript=eq;prot=eq; - 4 No
BD1G14060 bdi protein kinase family protein, putative, expressed, subfamily SD-1a pid=Bradi1g14060.1;tid=Bradi1g14060.1;GeneName=Bradi1g14060;transcript=eq;prot=eq - Bd1 No
<< previous
1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 next >>

Download genes

Include following columns
gene_id
species
description
comment
strand
chr
outlier