Gene family  

Sub-families
ORTHO031880 (3 genes in 2 species)
ORTHO045629 (2 genes in 2 species)
ORTHO046097 (2 genes in 2 species)
View all sub-families (3)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (11 genes)
ath
Arabidopsis thaliana (4 genes)



The gene family HOM007207 has 15 genes in 2 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 1, showing 15 records out of 15 total, starting on record 1, ending on 15

gene_id species description comment strand chr outlier
AL3G40610 aly name=Al_scaffold_0003_3918;pid=875277;prot=eq;tid=906790 + scaffold_3 No
AL5G17640 aly name=scaffold_501826.1;pid=906122;prot=eq;tid=937635 - scaffold_5 No
AL5G17650 aly name=scaffold_501827.1;pid=906123;prot=eq;tid=937636 - scaffold_5 No
AL7G09400 aly name=fgenesh2_kg.7__957__AT1G45100.1;pid=491524;prot=eq;tid=491524 - scaffold_7 No
AL7G31980 aly name=Al_scaffold_0007_3083;pid=859584;prot=eq;tid=891097 + scaffold_7 No
AL7G34340 aly name=Al_scaffold_0007_3321;pid=859822;prot=eq;tid=891335 + scaffold_7 No
AL7G34390 aly name=scaffold_703611.1;pid=915869;prot=eq;tid=947382 - scaffold_7 No
AL7G35950 aly name=fgenesh1_pg.C_scaffold_7002983;pid=355810;prot=eq;tid=355810 + scaffold_7 No
AL7G36500 aly name=fgenesh1_pg.C_scaffold_7003025;pid=355852;prot=eq;tid=355852 - scaffold_7 No
AL7G36920 aly name=Al_scaffold_0007_3570;pid=860071;prot=eq;tid=891584 + scaffold_7 No
AL7G37940 aly name=fgenesh1_pg.C_scaffold_7003156;pid=355983;prot=eq;tid=355983 - scaffold_7 No
AT1G45100 ath RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT5G41690.1); Has 8161 Blast hits to 6227 proteins in 342 species: Archae - 0; Bacteria - 46; Metazoa - 4202; Fungi - 1513; Plants - 1680; Viruses - 0; Other Eukaryotes - 720 (source: NCBI BLink).;RNA-binding (RRM/RBD/RNP motifs) family protein transcript=eq;prot=eq; + 1 No
AT3G10845 ath RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT1G45100.1); Has 2317 Blast hits to 1788 proteins in 256 species: Archae - 0; Bacteria - 24; Metazoa - 947; Fungi - 528; Plants - 665; Viruses - 0; Other Eukaryotes - 153 (source: NCBI BLink).;RNA-binding (RRM/RBD/RNP motifs) family protein transcript=eq;prot=eq; + 3 No
AT3G48840 ath RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT5G41690.1); Has 486 Blast hits to 414 proteins in 161 species: Archae - 0; Bacteria - 125; Metazoa - 82; Fungi - 41; Plants - 172; Viruses - 0; Other Eukaryotes - 66 (source: NCBI BLink).;RNA-binding (RRM/RBD/RNP motifs) family protein transcript=eq;prot=eq; - 3 No
AT5G41690 ath RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT1G45100.1); Has 16649 Blast hits to 9973 proteins in 510 species: Archae - 6; Bacteria - 487; Metazoa - 7833; Fungi - 3042; Plants - 3517; Viruses - 0; Other Eukaryotes - 1764 (source: NCBI BLink).;RNA-binding (RRM/RBD/RNP motifs) family protein transcript=eq;prot=eq; - 5 No
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