Gene family 
- Id
- HOM006840
- Method
- BLASTP E_value=1e-05 MCL_I=2
- Sequences
- Sub-families
- No subfamilies present
- Keywords
-
Overview of gene family content
- ath
- Arabidopsis thaliana (2 genes)
- lja
- Lotus japonicus (4 genes)
- mtr
- Medicago truncatula (7 genes)
- osaindica
- Oryza sativa ssp. indica (2 genes)
- sbi
- Sorghum bicolor (3 genes)
The gene family HOM006840 has 18 genes in 5 species (2 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:
- gene family : HOM006840
Page 1 of 1, showing 18 records out of 18 total, starting on record 1, ending on 18
| gene_id | species | description | comment | strand | chr | outlier |
|---|---|---|---|---|---|---|
| AT1G34070 | ath | CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G48050.1); Has 648 Blast hits to 647 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 16; Fungi - 25; Plants - 607; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | transcript=eq;prot=eq; | + | 1 | No |
| AT5G48050 | ath | CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G34070.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | transcript=eq;prot=eq; | - | 5 | No |
| LJ0G093230 | lja | partial;prot=eq;transcript=eq;scaffold=LjSGA_030295;name=LjSGA_030295.1 | - | LjSGA_030295 | No | |
| LJ0G308750 | lja | partial;prot=eq;transcript=eq;scaffold=LjSGA_107403;name=LjSGA_107403.1.1 | + | LjSGA_107403 | No | |
| LJ0G331680 | lja | partial;prot=eq;transcript=eq;scaffold=LjSGA_117428;name=LjSGA_117428.1 | - | LjSGA_117428 | No | |
| LJ5G014590 | lja | partial;prot=eq;transcript=eq;scaffold=CM1574;name=chr5.CM1574.370.nc | - | chr5 | No | |
| MT0G21190 | mtr | Polynucleotidyl transferase (AHRD V1 *-*- A2I5F0_BETVU) | transcript=eq;prot=eq;pid=AC233574_2.1; | + | AC233574.1 | No |
| MT5G028890 | mtr | Unknown Protein (AHRD V1) | transcript=eq;prot=eq;pid=Medtr5g028890.1; | - | 5 | Yes |
| MT5G060470 | mtr | F9C16.1 (Fragment) (AHRD V1 ***- Q9LP17_ARATH) | transcript=eq;prot=eq;pid=Medtr5g060470.1; | + | 5 | No |
| MT7G065570 | mtr | Polynucleotidyl transferase (AHRD V1 *-*- A2I5F0_BETVU) | transcript=eq;prot=eq;pid=Medtr7g065570.1; | - | 7 | No |
| MT7G070030 | mtr | Polynucleotidyl transferase (AHRD V1 ***- A2I5F0_BETVU) | transcript=eq;prot=eq;pid=Medtr7g070030.1; | + | 7 | No |
| MT8G051610 | mtr | Unknown Protein (AHRD V1) | transcript=eq;prot=eq;pid=Medtr8g051610.1; | + | 8 | Yes |
| MT8G074100 | mtr | Polynucleotidyl transferase (AHRD V1 *-*- A2I5F0_BETVU) | transcript=eq;prot=eq;pid=Medtr8g074100.1; | + | 8 | No |
| OSINDICA_05G14000 | osaindica | source=BGI China;type=FgeneSH; | transcript=eq;prot=eq;name=OsIFCC041434; | + | Chr05 | No |
| OSINDICA_05G25050 | osaindica | source=BGI China;type=FgeneSH; | transcript=eq;prot=eq;name=OsIFCC020848; | - | Chr05 | No |
| SB03G040844 | sbi | 3 | prot=eq;pid=5036966;tid=5036966 | + | chr_3 | No |
| SB07G021667 | sbi | 7 | prot=eq;pid=5058782;tid=5058782 | - | chr_7 | No |
| SB09G002785 | sbi | 9 | prot=eq;pid=5045830;tid=5045830 | - | chr_9 | No |
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