Gene family  

Sub-families
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Keywords


Overview of gene family content




ath
Arabidopsis thaliana (2 genes)
lja
Lotus japonicus (4 genes)
mtr
Medicago truncatula (7 genes)
osaindica
Oryza sativa ssp. indica (2 genes)
sbi
Sorghum bicolor (3 genes)



The gene family HOM006840 has 18 genes in 5 species (2 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 1, showing 18 records out of 18 total, starting on record 1, ending on 18

gene_id species description comment strand chr outlier
AT1G34070 ath CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G48050.1); Has 648 Blast hits to 647 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 16; Fungi - 25; Plants - 607; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). transcript=eq;prot=eq; + 1 No
AT5G48050 ath CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G34070.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). transcript=eq;prot=eq; - 5 No
LJ0G093230 lja partial;prot=eq;transcript=eq;scaffold=LjSGA_030295;name=LjSGA_030295.1 - LjSGA_030295 No
LJ0G308750 lja partial;prot=eq;transcript=eq;scaffold=LjSGA_107403;name=LjSGA_107403.1.1 + LjSGA_107403 No
LJ0G331680 lja partial;prot=eq;transcript=eq;scaffold=LjSGA_117428;name=LjSGA_117428.1 - LjSGA_117428 No
LJ5G014590 lja partial;prot=eq;transcript=eq;scaffold=CM1574;name=chr5.CM1574.370.nc - chr5 No
MT0G21190 mtr Polynucleotidyl transferase (AHRD V1 *-*- A2I5F0_BETVU) transcript=eq;prot=eq;pid=AC233574_2.1; + AC233574.1 No
MT5G028890 mtr Unknown Protein (AHRD V1) transcript=eq;prot=eq;pid=Medtr5g028890.1; - 5 Yes
MT5G060470 mtr F9C16.1 (Fragment) (AHRD V1 ***- Q9LP17_ARATH) transcript=eq;prot=eq;pid=Medtr5g060470.1; + 5 No
MT7G065570 mtr Polynucleotidyl transferase (AHRD V1 *-*- A2I5F0_BETVU) transcript=eq;prot=eq;pid=Medtr7g065570.1; - 7 No
MT7G070030 mtr Polynucleotidyl transferase (AHRD V1 ***- A2I5F0_BETVU) transcript=eq;prot=eq;pid=Medtr7g070030.1; + 7 No
MT8G051610 mtr Unknown Protein (AHRD V1) transcript=eq;prot=eq;pid=Medtr8g051610.1; + 8 Yes
MT8G074100 mtr Polynucleotidyl transferase (AHRD V1 *-*- A2I5F0_BETVU) transcript=eq;prot=eq;pid=Medtr8g074100.1; + 8 No
OSINDICA_05G14000 osaindica source=BGI China;type=FgeneSH; transcript=eq;prot=eq;name=OsIFCC041434; + Chr05 No
OSINDICA_05G25050 osaindica source=BGI China;type=FgeneSH; transcript=eq;prot=eq;name=OsIFCC020848; - Chr05 No
SB03G040844 sbi 3 prot=eq;pid=5036966;tid=5036966 + chr_3 No
SB07G021667 sbi 7 prot=eq;pid=5058782;tid=5058782 - chr_7 No
SB09G002785 sbi 9 prot=eq;pid=5045830;tid=5045830 - chr_9 No
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