Gene family  

Sub-families
No subfamilies present
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (1 gene)
ath
Arabidopsis thaliana (1 gene)
bdi
Brachypodium distachyon (1 gene)
fve
Fragaria vesca (1 gene)
gma
Glycine max (2 genes)
lja
Lotus japonicus (1 gene)
mdo
Malus domestica (1 gene)
mes
Manihot esculenta (1 gene)
mtr
Medicago truncatula (1 gene)
osa
Oryza sativa ssp. japonica (1 gene)
osaindica
Oryza sativa ssp. indica (1 gene)
ppa
Physcomitrella patens (1 gene)
ptr
Populus trichocarpa (1 gene)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (1 gene)
tca
Theobroma cacao (1 gene)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (1 gene)



The gene family HOM006675 has 19 genes in 18 species (1 outlier gene).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 1, showing 19 records out of 19 total, starting on record 1, ending on 19

gene_id species description comment strand chr outlier
AL1G07590 aly name=fgenesh1_pg.C_scaffold_1000650;pid=334085;prot=eq;tid=334085 - scaffold_1 No
AT1G07980 ath 'nuclear factor Y, subunit C10' (NF-YC10); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular, chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor CBF/NF-Y/archaeal histone (InterPro:IPR003958), Histone-fold (InterPro:IPR009072); Has 1154 Blast hits to 1151 proteins in 206 species: Archae - 0; Bacteria - 0; Metazoa - 432; Fungi - 306; Plants - 324; Viruses - 0; Other Eukaryotes - 92 (source: NCBI BLink).;nuclear factor Y, subunit C10 transcript=eq;prot=eq; - 1 No
BD1G01300 bdi pid=Bradi1g01300.1;tid=Bradi1g01300.1;GeneName=Bradi1g01300;transcript=eq;prot=eq + Bd1 No
FV3G37610 fve DNA polymerase epsilon subunit C (DNA polymerase II subunit C) (probable) transcript=eq;prot=eq;pid=gene04816 - LG3 No
GM11G20740 gma 11 pid=16284493;transcript=eq;prot=eq;name=Glyma11g20740.1 - Gm11 No
GM12G07390 gma 12 pid=16286741;transcript=eq;prot=eq;name=Glyma12g07390.1 - Gm12 No
LJ3G031230 lja prot=eq;transcript=eq;scaffold=CM0136;name=chr3.CM0136.60.nc - chr3 No
MD03G008650 mdo transcript=eq;prot=eq;pid=MDP0000129026;tid=MDP0000129026;contig=MDC016101.240 + 3 No
ME06327G00280 mes PACid=17968893;RNAname=cassava4.1_015531m;GeneName=cassava4.1_015531m.g;transcript=ne;prot=eq + scaffold06327 No
MT4G059710 mtr DNA polymerase epsilon subunit 4 (AHRD V1 *-*- Q9CQ36); contains Interpro domain(s) IPR003958 Transcription factor CBF/NF-Y/archaeal histone transcript=eq;prot=eq;pid=Medtr4g059710.1; + 4 No
OS03G63530 osa histone%2Dlike transcription factor and archaeal histone, putative, expressed transcript=eq;prot=eq; + 3 No
OSINDICA_03G60600 osaindica source=BGI China;type=FgeneSH; transcript=eq;prot=eq;name=OsIFCC038469; + Chr03 Yes
PP00329G00160 ppa NULL name=fgenesh1_pg.scaffold_329000016,pid=97592,prot=eq,tid=97592 - scaffold_329 No
PT09G01560 ptr PACid=17324049;name=POPTR_0009s01750;alias=pt005135m,estExt_fgenesh4_pg.C_LG_IX1426; transcript=eq;prot=eq;protein_id=17324049; - scaffold_9 No
RC29643G00150 rco name=29643.m000337;gene=29643.t000015;note=29643.t000015;transcript=eq;prot=eq - 29643 No
SB01G000900 sbi 1 prot=eq;pid=5047678;tid=5047678 - chr_1 No
TC09G025660 tca RNAname=Tc09_t025660;GeneName=Tc09_g025660;transcript=eq;prot=eq + Tc09 No
VV06G05210 vvi name=GSVIVG01025169001; transcript=eq;prot=eq;name=GSVIVG01025169001;pid=GSVIVG01025169001;tid=GSVIVT01025169001; + chr6 No
ZM01G59800 zma name=GRMZM2G083964;tid=GRMZM2G083964_T02;pid=GRMZM2G083964_P02;transcript=eq;prot=eq; + 1 No
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