Gene family  

Sub-families
ORTHO012109 (16 genes in 13 species)
ORTHO052812 (2 genes in 1 species)
View all sub-families (2)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (1 gene)
ath
Arabidopsis thaliana (1 gene)
cpa
Carica papaya (1 gene)
fve
Fragaria vesca (1 gene)
gma
Glycine max (3 genes)
lja
Lotus japonicus (1 gene)
mdo
Malus domestica (3 genes)
mes
Manihot esculenta (2 genes)
mtr
Medicago truncatula (1 gene)
ptr
Populus trichocarpa (2 genes)
rco
Ricinus communis (1 gene)
tca
Theobroma cacao (1 gene)
vvi
Vitis vinifera (1 gene)



The gene family HOM006665 has 19 genes in 13 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 1, showing 19 records out of 19 total, starting on record 1, ending on 19

gene_id species description comment strand chr outlier
AL8G07150 aly name=fgenesh2_kg.8__500__AT5G43190.1;pid=494684;prot=eq;tid=494684 + scaffold_8 No
AT5G43190 ath Galactose oxidase/kelch repeat superfamily protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 2 (InterPro:IPR011498), F-box associated interaction domain (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat superfamily protein (TAIR:AT1G27340.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;Galactose oxidase/kelch repeat superfamily protein transcript=eq;prot=eq; - 5 No
CP34911G00010 cpa name=evm.TU.contig_34911.1;pid=evm.TU.contig_34911.1;prot=eq;transcript=eq - contig_34911 No
FV2G31510 fve F-box/kelch-repeat protein At5g43190 (probable) transcript=eq;prot=eq;pid=gene02570 - LG2 No
GM00G00480 gma 92 pid=16242815;transcript=eq;prot=eq;name=Glyma0092s00200.1 + scaffold_92 No
GM04G04790 gma 04 pid=16254877;transcript=eq;prot=eq;name=Glyma04g04790.1 + Gm04 No
GM06G04870 gma 06 pid=16261739;transcript=eq;prot=eq;name=Glyma06g04870.1 + Gm06 No
LJ5G003560 lja prot=eq;transcript=eq;scaffold=CM0096;name=chr5.CM0096.540.nd + chr5 No
MD00G407960 mdo transcript=eq;prot=eq;pid=MDP0000215116;tid=MDP0000215116;contig=MDC018567.27 + MDC018567.27 No
MD08G009880 mdo transcript=eq;prot=eq;pid=MDP0000619285;tid=MDP0000619285;contig=MDC002473.339 + 8 No
MD15G001910 mdo transcript=eq;prot=eq;pid=MDP0000483301;tid=MDP0000483301;contig=MDC010485.443 + 15 No
ME03237G00260 mes PACid=17992729;RNAname=cassava4.1_028837m;GeneName=cassava4.1_028837m.g;transcript=eq;prot=eq + scaffold03237 No
ME05153G00010 mes PACid=17965173;RNAname=cassava4.1_009067m;GeneName=cassava4.1_009067m.g;transcript=eq;prot=eq - scaffold05153 No
MT1G018140 mtr F-box/kelch-repeat protein At5g43190 (AHRD V1 ***- Q9FHS6); contains Interpro domain(s) IPR011043 Galactose oxidase/kelch, beta-propeller transcript=eq;prot=eq;pid=Medtr1g018140.1; + 1 No
PT02G11760 ptr PACid=17331089;name=POPTR_0002s11950;alias=pt020873m; transcript=eq;prot=eq;protein_id=17331089; + scaffold_2 No
PT14G01460 ptr PACid=17344957;name=POPTR_0014s01650;alias=pt035694m,fgenesh4_pm.C_LG_XIV000027; transcript=eq;prot=eq;protein_id=17344957; + scaffold_14 No
RC30170G01050 rco name=30170.m013740;gene=30170.t000152;note=30170.t000152;transcript=eq;prot=eq + 30170 No
TC08G007510 tca RNAname=Tc08_t007510;GeneName=Tc08_g007510;transcript=eq;prot=eq + Tc08 No
VV18G05960 vvi name=GSVIVG01009345001; transcript=eq;prot=eq;name=GSVIVG01009345001;pid=GSVIVG01009345001;tid=GSVIVT01009345001; + chr18 No
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