Gene family  

Sub-families
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Keywords


Overview of gene family content




aly
Arabidopsis lyrata (3 genes)
ath
Arabidopsis thaliana (2 genes)
fve
Fragaria vesca (2 genes)
gma
Glycine max (3 genes)
lja
Lotus japonicus (4 genes)
mtr
Medicago truncatula (1 gene)
ptr
Populus trichocarpa (3 genes)
rco
Ricinus communis (2 genes)



The gene family HOM006537 has 20 genes in 8 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 1, showing 20 records out of 20 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL0G07320 aly name=fgenesh1_pg.C_scaffold_299000002;pid=359504;prot=eq;tid=359504 - scaffold_299 No
AL8G27260 aly name=fgenesh2_kg.8__2077__AT5G61080.1;pid=496261;prot=eq;tid=496261 - scaffold_8 No
AL8G27290 aly name=fgenesh2_kg.8__2079__AT5G61120.1;pid=496263;prot=eq;tid=496263 - scaffold_8 No
AT5G61090 ath Polynucleotidyl transferase, ribonuclease H-like superfamily protein; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G61120.1); Has 24046 Blast hits to 15037 proteins in 1367 species: Archae - 80; Bacteria - 6670; Metazoa - 6830; Fungi - 2746; Plants - 3211; Viruses - 972; Other Eukaryotes - 3537 (source: NCBI BLink).;Polynucleotidyl transferase, ribonuclease H-like superfamily protein transcript=eq;prot=eq; - 5 No
AT5G61120 ath BEST Arabidopsis thaliana protein match is: Polynucleotidyl transferase, ribonuclease H-like superfamily protein (TAIR:AT5G61090.1); Has 125 Blast hits to 115 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 22; Fungi - 0; Plants - 102; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). transcript=eq;prot=eq; - 5 No
FV4G16780 fve Putative disease resistance protein RGA1 (probable) transcript=eq;prot=eq;pid=gene06522 + LG4 No
FV5G12190 fve Macrophage colony-stimulating factor 1 receptor 2 (CSF-1-R 2), Precursor (probable) transcript=eq;prot=eq;pid=gene25807 - LG5 No
GM04G32480 gma 04 pid=16256534;transcript=eq;prot=eq;name=Glyma04g32480.1 - Gm04 No
GM06G22040 gma 06 pid=16263776;transcript=eq;prot=eq;name=Glyma06g22040.1 + Gm06 No
GM07G34390 gma 07 pid=16268701;transcript=eq;prot=eq;name=Glyma07g34390.1 + Gm07 No
LJ0G458730 lja prot=eq;transcript=eq;scaffold=LjT11A15;name=LjT11A15.20.nc - chr0 No
LJ1G015380 lja prot=eq;transcript=eq;scaffold=CM0036;name=chr1.CM0036.140.nc + chr1 No
LJ3G025850 lja prot=eq;transcript=eq;scaffold=LjT36L08;name=chr3.LjT36L08.50.nc + chr3 No
LJ5G017950 lja partial;prot=eq;transcript=eq;scaffold=CM0211;name=chr5.CM0211.10.nc + chr5 No
MT3G025330 mtr PHD-finger family protein expressed (AHRD V1 *-*- Q53MN0_ORYSJ); contains Interpro domain(s) IPR011011 Zinc finger, FYVE/PHD-type transcript=eq;prot=eq;pid=Medtr3g025330.1; - 3 No
PT09G09090 ptr PACid=17309364;name=POPTR_0009s09280;alias=pt005614m; transcript=eq;prot=eq;protein_id=17309364; + scaffold_9 No
PT14G03770 ptr PACid=17325093;name=POPTR_0014s03960;alias=pt036755m; transcript=eq;prot=eq;protein_id=17325093; - scaffold_14 No
PT19G04440 ptr PACid=17308254;name=POPTR_0019s04630;alias=pt042099m; transcript=eq;prot=eq;protein_id=17308254; + scaffold_19 No
RC28312G00040 rco name=28312.m000130;gene=28312.t000004;note=28312.t000004;transcript=eq;prot=eq - 28312 No
RC30138G01480 rco name=30138.m003979;gene=30138.t000153;note=30138.t000153;transcript=eq;prot=eq - 30138 No
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