Gene family  

Sub-families
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Keywords


Overview of gene family content




aly
Arabidopsis lyrata (1 gene)
ath
Arabidopsis thaliana (1 gene)
bdi
Brachypodium distachyon (1 gene)
cpa
Carica papaya (1 gene)
fve
Fragaria vesca (2 genes)
gma
Glycine max (3 genes)
lja
Lotus japonicus (1 gene)
mdo
Malus domestica (1 gene)
mtr
Medicago truncatula (1 gene)
osa
Oryza sativa ssp. japonica (1 gene)
osaindica
Oryza sativa ssp. indica (1 gene)
ppa
Physcomitrella patens (1 gene)
ptr
Populus trichocarpa (1 gene)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (1 gene)
tca
Theobroma cacao (1 gene)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (2 genes)



The gene family HOM006230 has 22 genes in 18 species (1 outlier gene).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 22 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL2G05680 aly name=fgenesh2_kg.2__415__AT1G60460.3;pid=475285;prot=eq;tid=475285 - scaffold_2 No
AT1G60460 ath unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; Has 23 Blast hits to 23 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). transcript=eq;prot=eq; + 1 No
BD1G34717 bdi pid=Bradi1g34717.1;tid=Bradi1g34717.1;GeneName=Bradi1g34717;transcript=eq;prot=eq + Bd1 No
CP00069G00570 cpa name=evm.TU.supercontig_69.57;pid=evm.TU.supercontig_69.57;prot=eq;transcript=eq + supercontig_69 No
FV0G08510 fve hypothetical protein transcript=eq;prot=eq;pid=gene06218 - scf0513158 Yes
FV0G08580 fve Non-motile and phage-resistance protein (probable) transcript=eq;prot=eq;pid=gene06225 - scf0513158 No
GM00G00770 gma 430 pid=16254298;transcript=eq;prot=eq;name=Glyma0430s00210.1 - scaffold_430 No
GM01G03660 gma 01 pid=16243297;transcript=eq;prot=eq;name=Glyma01g03660.1 - Gm01 No
GM02G04030 gma 02 pid=16246908;transcript=eq;prot=eq;name=Glyma02g04030.1 + Gm02 No
LJ2G018290 lja prot=eq;transcript=eq;scaffold=CM0008;name=chr2.CM0008.200.nc + chr2 No
MD00G222380 mdo transcript=eq;prot=eq;pid=MDP0000285600;tid=MDP0000285600;contig=MDC009624.132 + MDC009624.132 No
MT5G034180 mtr Unknown Protein (AHRD V1) transcript=eq;prot=eq;pid=Medtr5g034180.1; - 5 No
OS06G49450 osa expressed protein transcript=eq;prot=eq; + 6 No
OSINDICA_06G45290 osaindica source=BGI China;type=FgeneSH; transcript=eq;prot=eq;name=OsIFCC012043; + Chr06 No
PP00097G00940 ppa NULL name=fgenesh2_pg.scaffold_97000095,pid=230263,prot=eq,tid=230263 - scaffold_97 No
PT10G04020 ptr PACid=17321507;name=POPTR_0010s05160;alias=pt012036m,fgenesh4_pg.C_LG_X000625; transcript=eq;prot=eq;protein_id=17321507; + scaffold_10 No
RC29631G00240 rco name=29631.m001018;gene=29631.t000025;note=29631.t000025;transcript=eq;prot=eq - 29631 No
SB10G029430 sbi 10 prot=eq;pid=5062233;tid=5062233 + chr_10 No
TC02G023840 tca RNAname=Tc02_t023840;GeneName=Tc02_g023840;transcript=eq;prot=eq + Tc02 No
VV01G11380 vvi name=GSVIVG01013762001; transcript=eq;prot=eq;name=GSVIVG01013762001;pid=GSVIVG01013762001;tid=GSVIVT01013762001; - chr1 No
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