Gene family  

Sub-families
ORTHO009839 (19 genes in 16 species)
ORTHO043868 (2 genes in 2 species)
View all sub-families (2)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (2 genes)
ath
Arabidopsis thaliana (2 genes)
bdi
Brachypodium distachyon (2 genes)
cpa
Carica papaya (1 gene)
fve
Fragaria vesca (1 gene)
gma
Glycine max (2 genes)
mdo
Malus domestica (1 gene)
mes
Manihot esculenta (3 genes)
osa
Oryza sativa ssp. japonica (1 gene)
ppa
Physcomitrella patens (1 gene)
ptr
Populus trichocarpa (1 gene)
sbi
Sorghum bicolor (2 genes)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (1 gene)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (1 gene)



The gene family HOM006181 has 23 genes in 16 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 23 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G05290 aly name=fgenesh2_kg.1__538__AT1G05780.1;pid=470584;prot=eq;tid=470584 + scaffold_1 No
AL4G16610 aly name=fgenesh1_pg.C_scaffold_4001272;pid=344930;prot=eq;tid=344930 - scaffold_4 No
AT1G05780 ath Vacuolar ATPase assembly integral membrane protein VMA21-like domain; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Vacuolar ATPase assembly integral membrane protein VMA21-like domain (InterPro:IPR019013); BEST Arabidopsis thaliana protein match is: Vacuolar ATPase assembly integral membrane protein VMA21-like domain (TAIR:AT2G31710.1); Has 33 Blast hits to 33 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).;Vacuolar ATPase assembly integral membrane protein VMA21-like domain transcript=eq;prot=eq; + 1 No
AT2G31710 ath Vacuolar ATPase assembly integral membrane protein VMA21-like domain; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Vacuolar ATPase assembly integral membrane protein VMA21-like domain (InterPro:IPR019013); BEST Arabidopsis thaliana protein match is: Vacuolar ATPase assembly integral membrane protein VMA21-like domain (TAIR:AT1G05780.1); Has 35 Blast hits to 35 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).;Vacuolar ATPase assembly integral membrane protein VMA21-like domain transcript=eq;prot=eq; - 2 No
BD1G69860 bdi pid=Bradi1g69860.1;tid=Bradi1g69860.1;GeneName=Bradi1g69860;transcript=eq;prot=eq + Bd1 No
BD5G21570 bdi pid=Bradi5g21570.1;tid=Bradi5g21570.1;GeneName=Bradi5g21570;transcript=eq;prot=eq + Bd5 No
CP00051G01390 cpa name=evm.TU.supercontig_51.139;pid=evm.TU.supercontig_51.139;prot=eq;transcript=eq + supercontig_51 No
FV4G05780 fve Vacuolar ATPase assembly integral membrane protein VMA21 (probable) transcript=eq;prot=eq;pid=gene28992 + LG4 No
GM13G23940 gma 13 pid=16291361;transcript=eq;prot=eq;name=Glyma13g23940.1 - Gm13 No
GM19G01350 gma 19 pid=16311543;transcript=eq;prot=eq;name=Glyma19g01350.1 - Gm19 No
MD10G018980 mdo transcript=eq;prot=eq;pid=MDP0000857799;tid=MDP0000857799;contig=MDC008558.180 - 10 No
ME00069G00090 mes PACid=17976733;RNAname=cassava4.1_026460m;GeneName=cassava4.1_026460m.g;transcript=eq;prot=eq - scaffold00069 No
ME02895G00200 mes PACid=17988211;RNAname=cassava4.1_024087m;GeneName=cassava4.1_024087m.g;transcript=ne;prot=eq - scaffold02895 No
ME02895G00210 mes PACid=17988203;RNAname=cassava4.1_030109m;GeneName=cassava4.1_030109m.g;transcript=eq;prot=eq - scaffold02895 No
OS04G52300 osa expressed protein transcript=eq;prot=eq; + 4 No
PP00391G00060 ppa NULL name=fgenesh1_pg.scaffold_391000008,pid=99444,prot=eq,tid=99444 + scaffold_391 No
PT01G15870 ptr PACid=17341459;name=POPTR_0001s16060;alias=pt040993m; transcript=eq;prot=eq;protein_id=17341459; + scaffold_1 No
SB06G028260 sbi 6 prot=eq;pid=5057847;tid=5057847 + chr_6 No
SB10G027250 sbi 10 prot=eq;pid=5032115;tid=5032115 - chr_10 No
SM00076G01000 smo proteinId=49779;transcriptId=49779;name=gw1.76.227.1;transcript=eq;prot=eq - scaffold_76 No
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