Gene family 
- Id
- HOM006181
- Method
- BLASTP E_value=1e-05 MCL_I=2
- Sequences
- Sub-families
-
ORTHO009839 (19 genes in 16 species)
ORTHO043868 (2 genes in 2 species)
View all sub-families (2)
- Keywords
-
Overview of gene family content
- aly
- Arabidopsis lyrata (2 genes)
- ath
- Arabidopsis thaliana (2 genes)
- bdi
- Brachypodium distachyon (2 genes)
- cpa
- Carica papaya (1 gene)
- fve
- Fragaria vesca (1 gene)
- gma
- Glycine max (2 genes)
- mdo
- Malus domestica (1 gene)
- mes
- Manihot esculenta (3 genes)
- osa
- Oryza sativa ssp. japonica (1 gene)
- ppa
- Physcomitrella patens (1 gene)
- ptr
- Populus trichocarpa (1 gene)
- sbi
- Sorghum bicolor (2 genes)
- smo
- Selaginella moellendorffii (1 gene)
- tca
- Theobroma cacao (1 gene)
- vvi
- Vitis vinifera (1 gene)
- zma
- Zea mays (1 gene)
The gene family HOM006181 has 23 genes in 16 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:
- gene family : HOM006181
Page 1 of 2, showing 20 records out of 23 total, starting on record 1, ending on 20
| gene_id | species | description | comment | strand | chr | outlier |
|---|---|---|---|---|---|---|
| AL1G05290 | aly | name=fgenesh2_kg.1__538__AT1G05780.1;pid=470584;prot=eq;tid=470584 | + | scaffold_1 | No | |
| AL4G16610 | aly | name=fgenesh1_pg.C_scaffold_4001272;pid=344930;prot=eq;tid=344930 | - | scaffold_4 | No | |
| AT1G05780 | ath | Vacuolar ATPase assembly integral membrane protein VMA21-like domain; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Vacuolar ATPase assembly integral membrane protein VMA21-like domain (InterPro:IPR019013); BEST Arabidopsis thaliana protein match is: Vacuolar ATPase assembly integral membrane protein VMA21-like domain (TAIR:AT2G31710.1); Has 33 Blast hits to 33 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).;Vacuolar ATPase assembly integral membrane protein VMA21-like domain | transcript=eq;prot=eq; | + | 1 | No |
| AT2G31710 | ath | Vacuolar ATPase assembly integral membrane protein VMA21-like domain; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Vacuolar ATPase assembly integral membrane protein VMA21-like domain (InterPro:IPR019013); BEST Arabidopsis thaliana protein match is: Vacuolar ATPase assembly integral membrane protein VMA21-like domain (TAIR:AT1G05780.1); Has 35 Blast hits to 35 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).;Vacuolar ATPase assembly integral membrane protein VMA21-like domain | transcript=eq;prot=eq; | - | 2 | No |
| BD1G69860 | bdi | pid=Bradi1g69860.1;tid=Bradi1g69860.1;GeneName=Bradi1g69860;transcript=eq;prot=eq | + | Bd1 | No | |
| BD5G21570 | bdi | pid=Bradi5g21570.1;tid=Bradi5g21570.1;GeneName=Bradi5g21570;transcript=eq;prot=eq | + | Bd5 | No | |
| CP00051G01390 | cpa | name=evm.TU.supercontig_51.139;pid=evm.TU.supercontig_51.139;prot=eq;transcript=eq | + | supercontig_51 | No | |
| FV4G05780 | fve | Vacuolar ATPase assembly integral membrane protein VMA21 (probable) | transcript=eq;prot=eq;pid=gene28992 | + | LG4 | No |
| GM13G23940 | gma | 13 | pid=16291361;transcript=eq;prot=eq;name=Glyma13g23940.1 | - | Gm13 | No |
| GM19G01350 | gma | 19 | pid=16311543;transcript=eq;prot=eq;name=Glyma19g01350.1 | - | Gm19 | No |
| MD10G018980 | mdo | transcript=eq;prot=eq;pid=MDP0000857799;tid=MDP0000857799;contig=MDC008558.180 | - | 10 | No | |
| ME00069G00090 | mes | PACid=17976733;RNAname=cassava4.1_026460m;GeneName=cassava4.1_026460m.g;transcript=eq;prot=eq | - | scaffold00069 | No | |
| ME02895G00200 | mes | PACid=17988211;RNAname=cassava4.1_024087m;GeneName=cassava4.1_024087m.g;transcript=ne;prot=eq | - | scaffold02895 | No | |
| ME02895G00210 | mes | PACid=17988203;RNAname=cassava4.1_030109m;GeneName=cassava4.1_030109m.g;transcript=eq;prot=eq | - | scaffold02895 | No | |
| OS04G52300 | osa | expressed protein | transcript=eq;prot=eq; | + | 4 | No |
| PP00391G00060 | ppa | NULL | name=fgenesh1_pg.scaffold_391000008,pid=99444,prot=eq,tid=99444 | + | scaffold_391 | No |
| PT01G15870 | ptr | PACid=17341459;name=POPTR_0001s16060;alias=pt040993m; | transcript=eq;prot=eq;protein_id=17341459; | + | scaffold_1 | No |
| SB06G028260 | sbi | 6 | prot=eq;pid=5057847;tid=5057847 | + | chr_6 | No |
| SB10G027250 | sbi | 10 | prot=eq;pid=5032115;tid=5032115 | - | chr_10 | No |
| SM00076G01000 | smo | proteinId=49779;transcriptId=49779;name=gw1.76.227.1;transcript=eq;prot=eq | - | scaffold_76 | No |