Gene family  

Sub-families
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Keywords


Overview of gene family content




aly
Arabidopsis lyrata (1 gene)
ath
Arabidopsis thaliana (1 gene)
bdi
Brachypodium distachyon (1 gene)
cpa
Carica papaya (2 genes)
fve
Fragaria vesca (1 gene)
gma
Glycine max (1 gene)
lja
Lotus japonicus (1 gene)
mdo
Malus domestica (3 genes)
mes
Manihot esculenta (1 gene)
osa
Oryza sativa ssp. japonica (1 gene)
osaindica
Oryza sativa ssp. indica (1 gene)
ppa
Physcomitrella patens (1 gene)
ptr
Populus trichocarpa (1 gene)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (1 gene)
tca
Theobroma cacao (1 gene)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (2 genes)



The gene family HOM006130 has 23 genes in 19 species (1 outlier gene).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 23 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL8G33820 aly name=fgenesh2_kg.8__2735__AT5G66810.1;pid=496919;prot=eq;tid=496919 + scaffold_8 No
AT5G66810 ath CONTAINS InterPro DOMAIN/s: CTLH, C-terminal LisH motif (InterPro:IPR006595); BEST Arabidopsis thaliana protein match is: LisH and RanBPM domains containing protein (TAIR:AT1G61150.1); Has 333 Blast hits to 242 proteins in 88 species: Archae - 0; Bacteria - 0; Metazoa - 104; Fungi - 47; Plants - 152; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink). transcript=eq;prot=eq; + 5 No
BD3G23290 bdi pid=Bradi3g23290.1;tid=Bradi3g23290.1;GeneName=Bradi3g23290;transcript=eq;prot=eq - Bd3 No
CP00055G01690 cpa name=evm.TU.supercontig_55.169;pid=evm.TU.supercontig_55.169;prot=eq;transcript=eq + supercontig_55 No
CP00055G01710 cpa name=evm.TU.supercontig_55.171;pid=evm.TU.supercontig_55.171;prot=eq;transcript=eq + supercontig_55 No
FV1G18560 fve UPF0559 protein (probable) transcript=eq;prot=eq;pid=gene24059 + LG1 No
GM05G16380 gma 05 pid=16259020;transcript=eq;prot=eq;name=Glyma05g16380.1 + Gm05 No
LJ0G104320 lja partial;prot=eq;transcript=eq;scaffold=LjSGA_033327;name=LjSGA_033327.1 - LjSGA_033327 No
MD00G082010 mdo transcript=eq;prot=eq;pid=MDP0000236867;tid=MDP0000236867;contig=MDC003475.251 + MDC003475.251 No
MD02G015090 mdo transcript=eq;prot=eq;pid=MDP0000120977;tid=MDP0000120977;contig=MDC003475.248 - 2 No
MD15G021740 mdo transcript=eq;prot=eq;pid=MDP0000247850;tid=MDP0000247850;contig=MDC003533.376 - 15 No
ME03513G00010 mes PACid=17978192;RNAname=cassava4.1_002641m;GeneName=cassava4.1_002641m.g;transcript=ne;prot=eq + scaffold03513 No
OS10G24070 osa expressed protein transcript=eq;prot=eq; + 10 No
OSINDICA_10G15560 osaindica source=BGI China;type=FgeneSH; transcript=eq;prot=eq;name=OsIFCC030602; + Chr10 No
PP00219G00210 ppa NULL name=e_gw1.219.67.1,pid=144752,prot=eq,tid=144752 + scaffold_219 No
PT05G17110 ptr PACid=17328856;name=POPTR_0005s18060;alias=pt032302m; transcript=eq;prot=eq;protein_id=17328856; - scaffold_5 No
RC30115G00030 rco name=30115.m001177;gene=30115.t000003;note=30115.t000003;transcript=eq;prot=eq - 30115 No
SB00G00780 sbi 13 prot=eq;pid=5047313;tid=5047313 - scaffold_13 No
TC01G004790 tca RNAname=Tc01_t004790;GeneName=Tc01_g004790;transcript=eq;prot=eq - Tc01 No
VC00108G00190 vca name=estExt_fgenesh4_pg.C_1080026;pid=108364;prot=eq;tid=108364 + scaffold_108 Yes
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