Gene family  

Sub-families
ORTHO009715 (20 genes in 17 species)
ORTHO048918 (2 genes in 2 species)
View all sub-families (2)
 
Keywords


Overview of gene family content




ath
Arabidopsis thaliana (1 gene)
bdi
Brachypodium distachyon (1 gene)
cpa
Carica papaya (1 gene)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (1 gene)
gma
Glycine max (3 genes)
lja
Lotus japonicus (1 gene)
mdo
Malus domestica (2 genes)
mes
Manihot esculenta (1 gene)
mtr
Medicago truncatula (1 gene)
osa
Oryza sativa ssp. japonica (1 gene)
osaindica
Oryza sativa ssp. indica (1 gene)
ptr
Populus trichocarpa (1 gene)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (1 gene)
tca
Theobroma cacao (1 gene)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (2 genes)
zma
Zea mays (1 gene)



The gene family HOM006084 has 23 genes in 19 species (1 outlier gene).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 23 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AT4G15420 ath Ubiquitin fusion degradation UFD1 family protein; FUNCTIONS IN: peptidase activity, zinc ion binding; INVOLVED IN: proteolysis, ubiquitin-dependent protein catabolic process; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Peptidase, C-terminal, archaeal/bacterial (InterPro:IPR007280), Ubiquitin fusion degradation protein UFD1 (InterPro:IPR004854); BEST Arabidopsis thaliana protein match is: Ubiquitin fusion degradation UFD1 family protein (TAIR:AT2G29070.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;Ubiquitin fusion degradation UFD1 family protein transcript=eq;prot=eq; + 4 No
BD2G40480 bdi pid=Bradi2g40480.1;tid=Bradi2g40480.1;GeneName=Bradi2g40480;transcript=eq;prot=eq + Bd2 No
CP00087G01030 cpa name=evm.TU.supercontig_87.103;pid=evm.TU.supercontig_87.103;prot=eq;transcript=eq - supercontig_87 No
CR03G06390 cre name=Chlre2_kg.scaffold_9000038;pid=143807;prot=eq;tid=143807;transcript=eq + chromosome_3 Yes
FV1G17060 fve Ubiquitin fusion degradation protein 1 homolog (probable) transcript=eq;prot=eq;pid=gene23984 - LG1 No
GM02G43890 gma 02 pid=16250079;transcript=eq;prot=eq;name=Glyma02g43890.1 + Gm02 No
GM14G05050 gma 14 pid=16294401;transcript=eq;prot=eq;name=Glyma14g05050.1 - Gm14 No
GM14G12530 gma 14 pid=16295282;transcript=eq;prot=eq;name=Glyma14g12530.1 - Gm14 No
LJ2G035650 lja prot=eq;transcript=eq;scaffold=CM0545;name=chr2.CM0545.430.nc - chr2 No
MD00G135830 mdo transcript=eq;prot=eq;pid=MDP0000442083;tid=MDP0000442083;contig=MDC005783.528 - MDC005783.528 No
MD00G299360 mdo transcript=eq;prot=eq;pid=MDP0000295085;tid=MDP0000295085;contig=MDC012741.382 + MDC012741.382 No
ME03402G00020 mes PACid=17990520;RNAname=cassava4.1_004976m;GeneName=cassava4.1_004976m.g;transcript=eq;prot=eq - scaffold03402 No
MT5G086350 mtr Ubiquitin fusion degradation protein 1 homolog (AHRD V1 *--- Q92890); contains Interpro domain(s) IPR004854 Ubiquitin fusion degradation protein UFD1 transcript=eq;prot=eq;pid=Medtr5g086350.1; + 5 No
OS01G35040 osa ZOS1%2D09 %2D C2H2 zinc finger protein, expressed transcript=eq;prot=eq; + 1 No
OSINDICA_01G33070 osaindica source=BGI China;type=FgeneSH; transcript=eq;prot=eq;name=OsIFCC002147; + Chr01 No
PT14G15260 ptr PACid=17322370;name=POPTR_0014s15450;alias=pt035281m,estExt_fgenesh4_pm.C_LG_XIV0431; transcript=eq;prot=eq;protein_id=17322370; - scaffold_14 No
RC29901G00190 rco name=29901.m000423;gene=29901.t000019;note=29901.t000019;transcript=eq;prot=eq - 29901 No
SB03G023980 sbi 3 prot=eq;pid=5053154;tid=5053154 + chr_3 No
TC01G016040 tca RNAname=Tc01_t016040;GeneName=Tc01_g016040;transcript=eq;prot=eq - Tc01 No
VC00004G00520 vca name=fgenesh4_pg.C_scaffold_4000056;pid=86921;prot=eq;tid=86921 + scaffold_4 No
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