Gene family  

Sub-families
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Keywords


Overview of gene family content




aly
Arabidopsis lyrata (1 gene)
ath
Arabidopsis thaliana (1 gene)
bdi
Brachypodium distachyon (1 gene)
cpa
Carica papaya (1 gene)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (1 gene)
gma
Glycine max (1 gene)
lja
Lotus japonicus (1 gene)
mdo
Malus domestica (1 gene)
mes
Manihot esculenta (1 gene)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (2 genes)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (1 gene)
osaindica
Oryza sativa ssp. indica (1 gene)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (1 gene)
ptr
Populus trichocarpa (1 gene)
rco
Ricinus communis (1 gene)
tca
Theobroma cacao (1 gene)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (1 gene)



The gene family HOM005978 has 24 genes in 23 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 24 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G29280 aly name=fgenesh2_kg.1__2976__AT1G28140.1;pid=473022;prot=eq;tid=473022 - scaffold_1 No
AT1G28140 ath unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2301, transmembrane (InterPro:IPR019275); Has 140 Blast hits to 140 proteins in 72 species: Archae - 0; Bacteria - 86; Metazoa - 10; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). transcript=eq;prot=eq; - 1 No
BD1G01660 bdi pid=Bradi1g01660.1;tid=Bradi1g01660.1;GeneName=Bradi1g01660;transcript=eq;prot=eq - Bd1 No
CP00182G00020 cpa name=evm.TU.supercontig_182.2;pid=evm.TU.supercontig_182.2;prot=eq;transcript=eq + supercontig_182 No
CR04G03570 cre name=SKA_estExt_fgenesh2_kg.C_150058;pid=205879;prot=eq;tid=205884;transcript=eq - chromosome_4 No
FV0G14100 fve hypothetical protein transcript=eq;prot=eq;pid=gene07305 + scf0513160 No
GM20G39400 gma 20 pid=16318407;transcript=eq;prot=eq;name=Glyma20g39400.1 - Gm20 No
LJ0G105010 lja partial;prot=eq;transcript=eq;scaffold=LjSGA_033549;name=LjSGA_033549.1 + LjSGA_033549 No
MD13G010650 mdo transcript=eq;prot=eq;pid=MDP0000155797;tid=MDP0000155797;contig=MDC005598.148 + 13 No
ME03512G00020 mes PACid=17977802;RNAname=cassava4.1_013172m;GeneName=cassava4.1_013140m.g;transcript=eq;prot=eq - scaffold03512 No
MRCC299_12G03990 mrcc299 name=gw2.12.342.1;pid=71530;prot=eq;tid=71530;transcript=eq + Chr_12 No
MT1G099520 mtr Unknown Protein (AHRD V1); contains Interpro domain(s) IPR019275 Protein of unknown function DUF2301, transmembrane transcript=eq;prot=eq;pid=Medtr1g099520.1; - 1 No
MT1G099680 mtr Unknown Protein (AHRD V1); contains Interpro domain(s) IPR019275 Protein of unknown function DUF2301, transmembrane transcript=eq;prot=eq;pid=Medtr1g099680.1; + 1 No
OL11G01640 olu NULL name=e_gwEuk.11.328.1,pid=44356,prot=eq,tid=44356 - Chr_11 No
OS03G63360 osa glutathione S%2Dtransferase, putative, expressed transcript=eq;prot=eq; - 3 No
OSINDICA_03G60430 osaindica source=BGI China;type=FgeneSH; transcript=eq;prot=eq;name=OsIFCC008992; - Chr03 No
OT11G01680 ota name=OT11G01680;protein_id=CAL55773.1;prot=eq - chrom11 No
PP00062G01050 ppa NULL name=gw1.62.155.1,pid=46340,prot=eq,tid=46340 + scaffold_62 No
PT01G09570 ptr PACid=17313591;name=POPTR_0001s09760;alias=pt039653m,estExt_fgenesh4_pg.C_LG_I0883; transcript=eq;prot=eq;protein_id=17313591; + scaffold_1 No
RC30128G04580 rco name=30128.m008557;gene=30128.t000018;note=30128.t000018;transcript=eq;prot=eq + 30128 No
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