Gene family  

Sub-families
No subfamilies present
 
Keywords


Overview of gene family content




ath
Arabidopsis thaliana (2 genes)
bdi
Brachypodium distachyon (1 gene)
fve
Fragaria vesca (2 genes)
gma
Glycine max (3 genes)
lja
Lotus japonicus (4 genes)
mdo
Malus domestica (1 gene)
mtr
Medicago truncatula (1 gene)
osa
Oryza sativa ssp. japonica (2 genes)
osaindica
Oryza sativa ssp. indica (2 genes)
ppa
Physcomitrella patens (1 gene)
rco
Ricinus communis (1 gene)
tca
Theobroma cacao (2 genes)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (1 gene)



The gene family HOM005920 has 24 genes in 14 species (1 outlier gene).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 24 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AT2G07725 ath Ribosomal L5P family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, intracellular; CONTAINS InterPro DOMAIN/s: Ribosomal protein L5 (InterPro:IPR002132), Ribosomal protein L5, N-terminal (InterPro:IPR020927); BEST Arabidopsis thaliana protein match is: ribosomal protein L5 (TAIR:ATMG00210.1); Has 117 Blast hits to 117 proteins in 56 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 112; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).;Ribosomal L5P family protein transcript=eq;prot=eq; + 2 No
ATMG00210 ath encodes a mitochondrial ribosomal protein L5, a constituent of the large subunit of the ribosomal complex;ribosomal protein L5 transcript=eq;prot=eq; + mitochondrial No
BD4G10447 bdi pid=Bradi4g10447.1;tid=Bradi4g10447.1;GeneName=Bradi4g10447;transcript=eq;prot=eq + Bd4 No
FV0G62080 fve Uncharacterized mitochondrial protein AtMg00660 (similar to) transcript=eq;prot=eq;pid=gene32838 - scf0510937 Yes
FV3G30300 fve 60S ribosomal protein L5, mitochondrial (similar to) transcript=eq;prot=eq;pid=gene25404 - LG3 No
GM00G00735 gma 405 pid=16254288;transcript=eq;prot=eq;name=Glyma0405s00210.1 - scaffold_405 No
GM00G01000 gma 1533 pid=16297088;transcript=eq;prot=eq;name=Glyma1533s00200.1 + scaffold_1533 No
GM05G18350 gma 05 pid=16259079;transcript=eq;prot=eq;name=Glyma05g18350.1 + Gm05 No
LJ0G003010 lja prot=eq;transcript=eq;scaffold=LjSGA_003897;name=LjSGA_003897.1 + LjSGA_003897 No
LJ0G016270 lja partial;prot=eq;transcript=eq;scaffold=LjSGA_010284;name=LjSGA_010284.1.1 + LjSGA_010284 No
LJ0G206260 lja partial;prot=eq;transcript=eq;scaffold=LjSGA_066248;name=LjSGA_066248.1.1 + LjSGA_066248 No
LJ0G230530 lja prot=eq;transcript=eq;scaffold=LjSGA_075410;name=LjSGA_075410.1.1 - LjSGA_075410 No
MD09G004890 mdo transcript=eq;prot=eq;pid=MDP0000863249;tid=MDP0000863249;contig=MDC007486.238 + 9 No
MT1G006190 mtr Ribosomal protein L5 (AHRD V1 ***- Q9ZZU0_PEA); contains Interpro domain(s) IPR002132 Ribosomal protein L5 transcript=eq;prot=eq;pid=Medtr1g006190.1; + 1 No
OS09G08890 osa mitochondrial 60S ribosomal protein L5, putative, expressed transcript=eq;prot=eq; - 9 No
OSINDICA_00G14380 osaindica source=BGI China;type=FgeneSH; transcript=eq;prot=eq;name=OsIFSC046028; - Scaffold013612 No
OSINDICA_MG00700 osaindica rpl5;ribosomal protein L7;protein_id=AAZ99233.1; - mitochondrial No
OSMG00690 osa rpl5;ribosomal protein L7;protein_id=AAZ99340.1; - mitochondrial No
PPMG00640 ppa rpl5;ribosomal protein L5;protein_id=BAE93107.1; transl_table=1; + mitochondrial No
RC45011G00010 rco name=45011.m000026;gene=45011.t000001;note=45011.t000001;transcript=eq;prot=eq + 45011 No
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