Gene family  

Sub-families
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Keywords


Overview of gene family content




aly
Arabidopsis lyrata (1 gene)
ath
Arabidopsis thaliana (1 gene)
bdi
Brachypodium distachyon (1 gene)
cpa
Carica papaya (1 gene)
fve
Fragaria vesca (1 gene)
gma
Glycine max (2 genes)
lja
Lotus japonicus (1 gene)
mdo
Malus domestica (1 gene)
mes
Manihot esculenta (1 gene)
mtr
Medicago truncatula (1 gene)
osa
Oryza sativa ssp. japonica (1 gene)
osaindica
Oryza sativa ssp. indica (1 gene)
ptr
Populus trichocarpa (3 genes)
rco
Ricinus communis (2 genes)
tca
Theobroma cacao (2 genes)
vvi
Vitis vinifera (2 genes)
zma
Zea mays (2 genes)



The gene family HOM005878 has 24 genes in 17 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 24 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL5G05420 aly name=fgenesh2_kg.5__439__AT3G26740.1;pid=484447;prot=eq;tid=484447 + scaffold_5 No
AT3G26740 ath transcripts are differentially regulated at the level of mRNA stability at different times of day controlled by the circadian clock. mRNAs are targets of the mRNA degradation pathway mediated by the downstream (DST) instability determinant.;CCR-like transcript=eq;prot=eq; + 3 No
BD2G03610 bdi pid=Bradi2g03610.1;tid=Bradi2g03610.1;GeneName=Bradi2g03610;transcript=eq;prot=eq - Bd2 No
CP00070G00760 cpa name=evm.TU.supercontig_70.76;pid=evm.TU.supercontig_70.76;prot=eq;transcript=eq + supercontig_70 No
FV0G13910 fve LRR receptor-like serine/threonine-protein kinase FEI 2, Precursor (probable) transcript=eq;prot=eq;pid=gene07286 - scf0513160 No
GM16G05350 gma 16 pid=16301564;transcript=eq;prot=eq;name=Glyma16g05350.1 + Gm16 No
GM19G27530 gma 19 pid=16312990;transcript=eq;prot=eq;name=Glyma19g27530.1 - Gm19 No
LJ1G040510 lja prot=eq;transcript=eq;scaffold=CM1880;name=chr1.CM1880.90.nc - chr1 No
MD04G005990 mdo transcript=eq;prot=eq;pid=MDP0000218935;tid=MDP0000218935;contig=MDC022279.259 + 4 No
ME02264G00190 mes PACid=17993193;RNAname=cassava4.1_017713m;GeneName=cassava4.1_017713m.g;transcript=eq;prot=eq + scaffold02264 No
MT7G084000 mtr Light-regulated protein (AHRD V1 *-*- Q03200); contains Interpro domain(s) IPR009856 Light regulated Lir1 transcript=eq;prot=eq;pid=Medtr7g084000.1; - 7 No
OS01G01340 osa light%2Dinduced protein 1%2Dlike, putative, expressed transcript=eq;prot=eq; - 1 No
OSINDICA_01G00350 osaindica source=BGI China;type=FgeneSH; transcript=eq;prot=eq;name=OsIFCC000021; - Chr01 No
PT01G12910 ptr PACid=17336920;name=POPTR_0001s13100;alias=pt040772m,Pt-CR9.2,estExt_fgenesh4_pm.C_LG_I0202; transcript=eq;prot=eq;protein_id=17336920; + scaffold_1 No
PT03G15240 ptr PACid=17334453;name=POPTR_0003s16190;alias=pt024367m; transcript=eq;prot=eq;protein_id=17334453; + scaffold_3 No
PT14G14060 ptr PACid=17323571;name=POPTR_0014s14250;alias=pt036470m,eugene3.00140924; transcript=eq;prot=eq;protein_id=17323571; + scaffold_14 No
RC30128G04490 rco name=30128.m008548;gene=30128.t000009;note=30128.t000009;transcript=eq;prot=eq - 30128 No
RC30131G01270 rco name=30131.m006987;gene=30131.t000138;note=30131.t000138;transcript=eq;prot=eq + 30131 No
TC00G012130 tca RNAname=Tc00_t012130;GeneName=Tc00_g012130;transcript=eq;prot=eq + Tc00 No
TC04G005150 tca RNAname=Tc04_t005150;GeneName=Tc04_g005150;transcript=eq;prot=eq - Tc04 No
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