Gene family  

Sub-families
ORTHO025864 (4 genes in 2 species)
ORTHO031906 (3 genes in 2 species)
ORTHO043705 (2 genes in 2 species)
View all sub-families (6)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (13 genes)
ath
Arabidopsis thaliana (11 genes)



The gene family HOM005849 has 24 genes in 2 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 24 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL2G19550 aly name=scaffold_201989.1;pid=894915;prot=eq;tid=926428 + scaffold_2 No
AL4G04710 aly name=fgenesh2_kg.4__362__AT2G24285.1;pid=481302;prot=eq;tid=481302 + scaffold_4 No
AL4G04750 aly name=scaffold_400484.1;pid=900983;prot=eq;tid=932496 + scaffold_4 No
AL4G04760 aly name=scaffold_400485.1;pid=900984;prot=eq;tid=932497 + scaffold_4 No
AL4G04770 aly name=scaffold_400486.1;pid=900985;prot=eq;tid=932498 + scaffold_4 No
AL4G05300 aly name=Al_scaffold_0004_509;pid=868346;prot=eq;tid=899859 - scaffold_4 No
AL4G05490 aly name=scaffold_400564.1;pid=901063;prot=eq;tid=932576 + scaffold_4 No
AL4G06770 aly name=scaffold_400697.1;pid=901196;prot=eq;tid=932709 - scaffold_4 No
AL4G08240 aly name=scaffold_400837.1;pid=901336;prot=eq;tid=932849 + scaffold_4 No
AL4G08260 aly name=scaffold_400839.1;pid=901338;prot=eq;tid=932851 + scaffold_4 No
AL7G33890 aly name=scaffold_703558.1;pid=915816;prot=eq;tid=947329 - scaffold_7 No
AL7G33900 aly name=scaffold_703559.1;pid=915817;prot=eq;tid=947330 - scaffold_7 No
AL8G07130 aly name=scaffold_800758.1;pid=917358;prot=eq;tid=948871 + scaffold_8 No
AT1G57730 ath RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G70910.1); Has 6244 Blast hits to 6227 proteins in 273 species: Archae - 0; Bacteria - 6; Metazoa - 1193; Fungi - 431; Plants - 3759; Viruses - 41; Other Eukaryotes - 814 (source: NCBI BLink).;RING/U-box superfamily protein transcript=eq;prot=eq; - 1 No
AT2G24285 ath BEST Arabidopsis thaliana protein match is: Zinc finger, C3HC4 type (RING finger) family protein (TAIR:AT2G24480.1); Has 26 Blast hits to 26 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). transcript=eq;prot=eq; - 2 No
AT2G24460 ath BEST Arabidopsis thaliana protein match is: Zinc finger, C3HC4 type (RING finger) family protein (TAIR:AT2G24480.1); Has 32 Blast hits to 32 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). transcript=eq;prot=eq; + 2 No
AT2G24480 ath Zinc finger, C3HC4 type (RING finger) family protein; FUNCTIONS IN: zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: Zinc finger, C3HC4 type (RING finger) family protein (TAIR:AT3G28620.1); Has 6257 Blast hits to 6243 proteins in 252 species: Archae - 0; Bacteria - 2; Metazoa - 1500; Fungi - 418; Plants - 3605; Viruses - 31; Other Eukaryotes - 701 (source: NCBI BLink).;Zinc finger, C3HC4 type (RING finger) family protein transcript=eq;prot=eq; + 2 No
AT2G25565 ath BEST Arabidopsis thaliana protein match is: Zinc finger, C3HC4 type (RING finger) family protein (TAIR:AT2G24480.1); Has 27 Blast hits to 27 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). transcript=eq;prot=eq; - 2 No
AT3G28620 ath Zinc finger, C3HC4 type (RING finger) family protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: Zinc finger, C3HC4 type (RING finger) family protein (TAIR:AT5G43200.1); Has 7635 Blast hits to 7616 proteins in 271 species: Archae - 0; Bacteria - 6; Metazoa - 1933; Fungi - 653; Plants - 3895; Viruses - 30; Other Eukaryotes - 1118 (source: NCBI BLink).;Zinc finger, C3HC4 type (RING finger) family protein transcript=eq;prot=eq; + 3 No
AT3G42940 ath BEST Arabidopsis thaliana protein match is: Zinc finger, C3HC4 type (RING finger) family protein (TAIR:AT2G24480.1); Has 66 Blast hits to 66 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 66; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). transcript=eq;prot=eq; + 3 No
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