Gene family  

Sub-families
No subfamilies present
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (2 genes)
ath
Arabidopsis thaliana (1 gene)
bdi
Brachypodium distachyon (1 gene)
cpa
Carica papaya (1 gene)
fve
Fragaria vesca (1 gene)
gma
Glycine max (1 gene)
lja
Lotus japonicus (2 genes)
mdo
Malus domestica (3 genes)
mes
Manihot esculenta (1 gene)
mtr
Medicago truncatula (1 gene)
osa
Oryza sativa ssp. japonica (1 gene)
osaindica
Oryza sativa ssp. indica (1 gene)
ppa
Physcomitrella patens (1 gene)
ptr
Populus trichocarpa (2 genes)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (1 gene)
tca
Theobroma cacao (1 gene)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (2 genes)



The gene family HOM005823 has 25 genes in 19 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
This page uses the Flash plugin.




Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 25 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL3G37700 aly name=fgenesh2_kg.3__3288__AT2G17033.2;pid=480587;prot=eq;tid=480587 + scaffold_3 No
AL3G37720 aly name=Al_scaffold_0003_3656;pid=875015;prot=eq;tid=906528 + scaffold_3 No
AT2G17033 ath pentatricopeptide (PPR) repeat-containing protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885), Smr protein/MutS2 C-terminal (InterPro:IPR002625); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G48730.1); Has 2363 Blast hits to 1770 proteins in 90 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 2346; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).;pentatricopeptide (PPR) repeat-containing protein transcript=eq;prot=eq; + 2 No
BD3G01770 bdi pid=Bradi3g01770.1;tid=Bradi3g01770.1;GeneName=Bradi3g01770;transcript=eq;prot=eq + Bd3 No
CP00020G01250 cpa name=evm.TU.supercontig_20.125;pid=evm.TU.supercontig_20.125;prot=eq;transcript=eq + supercontig_20 No
FV2G27300 fve Pentatricopeptide repeat-containing protein At2g17033 (similar to) transcript=eq;prot=eq;pid=gene23750 + LG2 No
GM20G23950 gma 20 pid=16316607;transcript=eq;prot=eq;name=Glyma20g23950.1 - Gm20 No
LJ5G030510 lja partial;prot=eq;transcript=eq;scaffold=CM1439;name=chr5.CM1439.20.nd - chr5 No
LJ5G030520 lja partial;prot=eq;transcript=eq;scaffold=CM1439;name=chr5.CM1439.30.nd + chr5 No
MD00G151770 mdo transcript=eq;prot=eq;pid=MDP0000548055;tid=MDP0000548055;contig=MDC006527.230 - MDC006527.230 No
MD00G233170 mdo transcript=eq;prot=eq;pid=MDP0000557377;tid=MDP0000557377;contig=MDC010134.244 - MDC010134.244 No
MD00G470500 mdo transcript=eq;prot=eq;pid=MDP0000309916;tid=MDP0000309916;contig=MDC021854.63 + MDC021854.63 No
ME03329G00230 mes PACid=17966921;RNAname=cassava4.1_006798m;GeneName=cassava4.1_006798m.g;transcript=eq;prot=eq + scaffold03329 No
MT1G113720 mtr Pentatricopeptide repeat-containing protein At2g17033 (AHRD V1 ***- Q8GWA9); contains Interpro domain(s) IPR002625 Smr protein/MutS2 C-terminal transcript=eq;prot=eq;pid=Medtr1g113720.1; + 1 No
OS02G02770 osa PPR repeat domain containing protein, putative, expressed transcript=eq;prot=eq; - 2 No
OSINDICA_02G01920 osaindica source=BGI China;type=FgeneSH; transcript=eq;prot=eq;name=OsIFCC012312; - Chr02 No
PP00439G00080 ppa NULL name=estExt_fgenesh1_pg.C_4390009,pid=173308,prot=eq,tid=173308 + scaffold_439 No
PT02G22140 ptr PACid=17550230;name=POPTR_0002s22520;alias=ptb000198,eugene3.92560001; transcript=eq;prot=eq;protein_id=17550230; + scaffold_2 No
PT09G13930 ptr PACid=17331945;name=POPTR_0009s14120;alias=pt004506m; transcript=eq;prot=eq;protein_id=17331945; - scaffold_9 No
RC29869G00050 rco name=29869.m001140;gene=29869.t000005;note=29869.t000005;transcript=eq;prot=eq - 29869 No
<< previous
1 | 2 next >>

Download genes

Include following columns
gene_id
species
description
comment
strand
chr
outlier