Gene family  

Sub-families
No subfamilies present
 
Keywords


Overview of gene family content




ath
Arabidopsis thaliana (1 gene)
bdi
Brachypodium distachyon (1 gene)
cpa
Carica papaya (1 gene)
gma
Glycine max (2 genes)
mdo
Malus domestica (5 genes)
mes
Manihot esculenta (2 genes)
mrcc299
Micromonas sp. RCC299 (1 gene)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (1 gene)
osaindica
Oryza sativa ssp. indica (1 gene)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (2 genes)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (1 gene)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (1 gene)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (1 gene)



The gene family HOM005720 has 25 genes in 18 species (4 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 25 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AT1G34360 ath translation initiation factor 3 (IF-3) family protein; FUNCTIONS IN: translation initiation factor activity; INVOLVED IN: translational initiation; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Translation initiation factor 3, N-terminal (InterPro:IPR019814), Translation initiation factor 3, C-terminal (InterPro:IPR019815), Translation initiation factor 3 (InterPro:IPR001288); BEST Arabidopsis thaliana protein match is: Translation initiation factor 3 protein (TAIR:AT2G24060.1); Has 45300 Blast hits to 30219 proteins in 3054 species: Archae - 48; Bacteria - 10638; Metazoa - 13046; Fungi - 7368; Plants - 4879; Viruses - 1090; Other Eukaryotes - 8231 (source: NCBI BLink).;translation initiation factor 3 (IF-3) family protein transcript=eq;prot=eq; + 1 No
BD3G00290 bdi pid=Bradi3g00290.1;tid=Bradi3g00290.1;GeneName=Bradi3g00290;transcript=eq;prot=eq + Bd3 No
CP00020G01060 cpa name=evm.TU.supercontig_20.106;pid=evm.TU.supercontig_20.106;prot=eq;transcript=eq - supercontig_20 No
GM10G42900 gma 10 pid=16281926;transcript=eq;prot=eq;name=Glyma10g42900.1 - Gm10 No
GM20G24110 gma 20 pid=16316626;transcript=eq;prot=eq;name=Glyma20g24110.1 + Gm20 No
MD00G228580 mdo transcript=eq;prot=eq;pid=MDP0000149049;tid=MDP0000149049;contig=MDC009912.401 + MDC009912.401 Yes
MD00G367320 mdo transcript=eq;prot=eq;pid=MDP0000406862;tid=MDP0000406862;contig=MDC016587.277 + MDC016587.277 Yes
MD08G007440 mdo transcript=eq;prot=eq;pid=MDP0000311396;tid=MDP0000311396;contig=MDC020307.197 + 8 No
MD10G005690 mdo transcript=eq;prot=eq;pid=MDP0000798550;tid=MDP0000798550;contig=MDC009912.411 + 10 Yes
MD10G005700 mdo transcript=eq;prot=eq;pid=MDP0000688011;tid=MDP0000688011;contig=MDC004008.538 + 10 No
ME07520G02170 mes PACid=17979133;RNAname=cassava4.1_026143m;GeneName=cassava4.1_026143m.g;transcript=eq;prot=eq - scaffold07520 Yes
ME07520G02180 mes PACid=17979424;RNAname=cassava4.1_019739m;GeneName=cassava4.1_019739m.g;transcript=eq;prot=eq - scaffold07520 No
MRCC299_09G04550 mrcc299 name=fgenesh2_pg.C_Chr_09000311;pid=102393;prot=eq;tid=102393;transcript=eq + Chr_09 No
OL10G00260 olu NULL name=C_Chr_10000005,pid=94783,prot=eq,tid=94783 + Chr_10 No
OS02G01110 osa translation initiation factor IF%2D3, putative, expressed transcript=eq;prot=eq; + 2 No
OSINDICA_02G00110 osaindica source=BGI China;type=FgeneSH; transcript=eq;prot=eq;name=OsIFCC012170; + Chr02 No
OT10G00250 ota translation initiation factor IF-3 (ISS); name=OT10G00250;protein_id=CAL55982.1;prot=eq + chrom10 No
PP00015G00310 ppa NULL name=estExt_fgenesh1_pg.C_150035,pid=159713,prot=eq,tid=159713 - scaffold_15 No
PP00054G01160 ppa NULL name=estExt_fgenesh1_pg.C_540118,pid=163323,prot=eq,tid=163323 + scaffold_54 No
RC29908G00630 rco name=29908.m006182;gene=29908.t000233;note=29908.t000233;transcript=eq;prot=eq + 29908 No
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