Gene family  

Sub-families
No subfamilies present
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (1 gene)
ath
Arabidopsis thaliana (1 gene)
bdi
Brachypodium distachyon (1 gene)
cpa
Carica papaya (1 gene)
cre
Chlamydomonas reinhardtii (2 genes)
fve
Fragaria vesca (1 gene)
gma
Glycine max (1 gene)
lja
Lotus japonicus (1 gene)
mdo
Malus domestica (2 genes)
mes
Manihot esculenta (1 gene)
mtr
Medicago truncatula (1 gene)
osa
Oryza sativa ssp. japonica (1 gene)
osaindica
Oryza sativa ssp. indica (1 gene)
ppa
Physcomitrella patens (1 gene)
ptr
Populus trichocarpa (1 gene)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (1 gene)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (2 genes)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (1 gene)



The gene family HOM005716 has 25 genes in 22 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 25 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL4G06730 aly name=fgenesh2_kg.4__464__AT2G25530.1;pid=481404;prot=eq;tid=481404 + scaffold_4 No
AT2G25530 ath AFG1-like ATPase family protein; FUNCTIONS IN: ATPase activity, ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AFG1-like (InterPro:IPR005654); BEST Arabidopsis thaliana protein match is: AFG1-like ATPase family protein (TAIR:AT4G28070.2); Has 3822 Blast hits to 3815 proteins in 1065 species: Archae - 0; Bacteria - 1862; Metazoa - 150; Fungi - 200; Plants - 101; Viruses - 0; Other Eukaryotes - 1509 (source: NCBI BLink).;AFG1-like ATPase family protein transcript=eq;prot=eq; + 2 No
BD1G01420 bdi nucleoside-triphosphatase activity, ATP binding (Blast2GO) pid=Bradi1g01420.1;tid=Bradi1g01420.1;GeneName=Bradi1g01420;transcript=eq;prot=eq + Bd1 No
CP00115G00040 cpa name=evm.TU.supercontig_115.4;pid=evm.TU.supercontig_115.4;prot=eq;transcript=eq + supercontig_115 No
CR07G00620 cre name=Chlre2_kg.scaffold_6000186;pid=142696;prot=eq;tid=142696;transcript=eq + chromosome_7 No
CR08G00600 cre name=e_gwW.29.142.1;pid=119467;prot=eq;tid=119467;transcript=eq + chromosome_8 No
FV2G40240 fve Lactation elevated protein 1 (probable) transcript=eq;prot=eq;pid=gene11660 + LG2 No
GM17G31700 gma 17 pid=16306737;transcript=eq;prot=eq;name=Glyma17g31700.1 - Gm17 No
LJ5G007680 lja partial;prot=eq;transcript=eq;scaffold=CM0345;name=chr5.CM0345.1350.nc + chr5 No
MD00G322630 mdo transcript=eq;prot=eq;pid=MDP0000255568;tid=MDP0000255568;contig=MDC013679.129 - MDC013679.129 No
MD12G011660 mdo transcript=eq;prot=eq;pid=MDP0000299243;tid=MDP0000299243;contig=MDC013406.176 + 12 No
ME04796G00620 mes PACid=17983668;RNAname=cassava4.1_003912m;GeneName=cassava4.1_003912m.g;transcript=eq;prot=eq - scaffold04796 No
MT1G012370 mtr AFG1-family ATPase (AHRD V1 *--- C5S6Z0_CHRVI); contains Interpro domain(s) IPR005654 ATPase, AFG1-like transcript=eq;prot=eq;pid=Medtr1g012370.1; - 1 No
OS03G63500 osa ATPase, AFG1 family domain containing protein, expressed transcript=eq;prot=eq; - 3 No
OSINDICA_03G60570 osaindica source=BGI China;type=FgeneSH; transcript=eq;prot=eq;name=OsIFCC009005; - Chr03 No
PP00075G00930 ppa NULL name=estExt_gwp_gw1.C_750115,pid=184663,prot=eq,tid=184663 - scaffold_75 No
PT06G25140 ptr PACid=17325467;name=POPTR_0006s26850;alias=pt017344m,fgenesh4_pg.C_LG_VI001793; transcript=eq;prot=eq;protein_id=17325467; - scaffold_6 No
RC29848G01990 rco name=29848.m004645;gene=29848.t000201;note=29848.t000201;transcript=eq;prot=eq + 29848 No
SB01G000940 sbi 1 prot=eq;pid=5047681;tid=5047681 + chr_1 No
SM00059G01980 smo proteinId=118636;transcriptId=118636;name=e_gw1.59.286.1;transcript=eq;prot=eq + scaffold_59 No
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