Gene family  

Sub-families
ORTHO045348 (2 genes in 1 species)
ORTHO046291 (2 genes in 2 species)
ORTHO046721 (2 genes in 1 species)
View all sub-families (3)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (14 genes)
ath
Arabidopsis thaliana (10 genes)
mes
Manihot esculenta (1 gene)



The gene family HOM005677 has 25 genes in 3 species (4 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 25 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G02790 aly name=scaffold_100295.1;pid=887501;prot=eq;tid=919014 - scaffold_1 No
AL1G28980 aly name=fgenesh1_pg.C_scaffold_1002484;pid=335919;prot=eq;tid=335919 - scaffold_1 No
AL1G35340 aly name=Al_scaffold_0001_3480;pid=881713;prot=eq;tid=913226 - scaffold_1 Yes
AL3G20070 aly name=scaffold_302190.1;pid=898220;prot=eq;tid=929733 + scaffold_3 No
AL5G12050 aly name=fgenesh1_pg.C_scaffold_5000904;pid=347512;prot=eq;tid=347512 + scaffold_5 No
AL6G14410 aly name=scaffold_601486.1;pid=909429;prot=eq;tid=940942 - scaffold_6 No
AL6G33240 aly name=Al_scaffold_0006_3215;pid=863706;prot=eq;tid=895219 + scaffold_6 No
AL7G27130 aly name=scaffold_702880.1;pid=915138;prot=eq;tid=946651 + scaffold_7 No
AL7G27470 aly name=Al_scaffold_0007_2648;pid=859149;prot=eq;tid=890662 - scaffold_7 No
AL7G33620 aly name=Al_scaffold_0007_3258;pid=859759;prot=eq;tid=891272 + scaffold_7 No
AL8G01690 aly name=Al_scaffold_0008_170;pid=883906;prot=eq;tid=915419 + scaffold_8 No
AL8G09000 aly name=scaffold_800923.1;pid=917523;prot=eq;tid=949036 - scaffold_8 No
AL8G09010 aly name=scaffold_800924.1;pid=917524;prot=eq;tid=949037 - scaffold_8 Yes
AL8G09400 aly name=scaffold_800962.1;pid=917562;prot=eq;tid=949075 + scaffold_8 No
AT1G52990 ath thioredoxin family protein; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: cell redox homeostasis; LOCATED IN: endomembrane system; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin, core (InterPro:IPR015467), Thioredoxin domain (InterPro:IPR013766), Thioredoxin, conserved site (InterPro:IPR017937), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), Thioredoxin-like (InterPro:IPR017936), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: Polynucleotidyl transferase, ribonuclease H-like superfamily protein (TAIR:AT5G65005.1); Has 15228 Blast hits to 15210 proteins in 2870 species: Archae - 230; Bacteria - 9375; Metazoa - 871; Fungi - 596; Plants - 1211; Viruses - 5; Other Eukaryotes - 2940 (source: NCBI BLink).;thioredoxin family protein transcript=eq;prot=eq; - 1 No
AT2G02650 ath Ribonuclease H-like superfamily protein; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), RNA-directed DNA polymerase (reverse transcriptase), related (InterPro:IPR015706); BEST Arabidopsis thaliana protein match is: Ribonuclease H-like superfamily protein (TAIR:AT3G09510.1); Has 1375 Blast hits to 1363 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 2; Plants - 1371; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).;Ribonuclease H-like superfamily protein transcript=eq;prot=eq; + 2 No
AT2G13980 ath Polynucleotidyl transferase, ribonuclease H-like superfamily protein; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337); BEST Arabidopsis thaliana protein match is: Ribonuclease H-like superfamily protein (TAIR:AT3G09510.1); Has 336 Blast hits to 336 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 336; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).;Polynucleotidyl transferase, ribonuclease H-like superfamily protein transcript=eq;prot=eq; - 2 No
AT3G18518 ath Member of a family of small polypeptides found only in angiosperm lineages.Contains a conserved 29 amino acid domain (RTF or DVL domain).;ROTUNDIFOLIA like 20 transcript=eq;prot=eq; + 3 Yes
AT3G23320 ath Polynucleotidyl transferase, ribonuclease H-like superfamily protein; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337); BEST Arabidopsis thaliana protein match is: Polynucleotidyl transferase, ribonuclease H-like superfamily protein (TAIR:AT5G65005.1); Has 26340 Blast hits to 15027 proteins in 881 species: Archae - 61; Bacteria - 2219; Metazoa - 13958; Fungi - 1495; Plants - 1186; Viruses - 392; Other Eukaryotes - 7029 (source: NCBI BLink).;Polynucleotidyl transferase, ribonuclease H-like superfamily protein transcript=eq;prot=eq; + 3 No
AT4G03292 ath Polynucleotidyl transferase, ribonuclease H-like superfamily protein; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337); BEST Arabidopsis thaliana protein match is: Ribonuclease H-like superfamily protein (TAIR:AT2G02650.1); Has 137 Blast hits to 137 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 137; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).;Polynucleotidyl transferase, ribonuclease H-like superfamily protein transcript=eq;prot=eq; - 4 No
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