Gene family  

Sub-families
No subfamilies present
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (1 gene)
ath
Arabidopsis thaliana (1 gene)
bdi
Brachypodium distachyon (1 gene)
cpa
Carica papaya (1 gene)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (1 gene)
gma
Glycine max (2 genes)
mdo
Malus domestica (2 genes)
mes
Manihot esculenta (2 genes)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (1 gene)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (1 gene)
osaindica
Oryza sativa ssp. indica (1 gene)
ota
Ostreococcus tauri (1 gene)
ptr
Populus trichocarpa (2 genes)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (1 gene)
tca
Theobroma cacao (1 gene)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (1 gene)



The gene family HOM005661 has 25 genes in 21 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 25 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL8G01300 aly name=fgenesh2_kg.8__109__AT5G46840.1;pid=494293;prot=eq;tid=494293 - scaffold_8 No
AT5G46840 ath RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).;RNA-binding (RRM/RBD/RNP motifs) family protein transcript=eq;prot=eq; + 5 No
BD1G01110 bdi RRM domain containing protein similar to RNA recognition motif containing protein, [Oryza sativa] LOC_Os03g63730 pid=Bradi1g01110.1;tid=Bradi1g01110.1;GeneName=Bradi1g01110;transcript=eq;prot=eq + Bd1 No
CP28481G00010 cpa name=evm.TU.contig_28481.1;pid=evm.TU.contig_28481.1;prot=eq;transcript=eq + contig_28481 No
CR16G02310 cre name=au.g6243_t1;pid=288041;prot=eq;tid=288048;transcript=eq + chromosome_16 No
FV5G33950 fve Nucleolar protein 12 (probable) transcript=eq;prot=eq;pid=gene02208 + LG5 No
GM01G02100 gma 01 pid=16243116;transcript=eq;prot=eq;name=Glyma01g02100.1 - Gm01 No
GM09G33840 gma 09 pid=16277096;transcript=eq;prot=eq;name=Glyma09g33840.1 + Gm09 No
MD06G003690 mdo transcript=eq;prot=eq;pid=MDP0000320818;tid=MDP0000320818;contig=MDC001647.167 + 6 No
MD16G017340 mdo transcript=eq;prot=eq;pid=MDP0000256079;tid=MDP0000256079;contig=MDC000231.285 + 16 No
ME04466G00010 mes PACid=17970204;RNAname=cassava4.1_018167m;GeneName=cassava4.1_018167m.g;transcript=eq;prot=eq - scaffold04466 No
ME04466G00020 mes PACid=17970205;RNAname=cassava4.1_009141m;GeneName=cassava4.1_009141m.g;transcript=eq;prot=eq - scaffold04466 No
MRCC299_03G04350 mrcc299 name=EuGene.0300010444;pid=57016;prot=eq;tid=57016;transcript=eq - Chr_03 No
MT5G029900 mtr RNA-binding protein 34 (AHRD V1 *-*- P42696); contains Interpro domain(s) IPR000504 RNA recognition motif, RNP-1 transcript=eq;prot=eq;pid=Medtr5g029900.1; - 5 No
OL01G01830 olu NULL name=fgenesh1_pg.C_Chr_1000139,pid=13679,prot=eq,tid=13679 + Chr_1 No
OS03G63730 osa RNA recognition motif containing protein, putative, expressed transcript=eq;prot=eq; + 3 No
OSINDICA_03G60800 osaindica source=BGI China;type=FgeneSH; transcript=eq;prot=eq;name=OsIFCC009025; + Chr03 No
OT01G01770 ota FOG: RRM domain (ISS); name=OT01G01770;protein_id=CAL50088.1;prot=eq + chrom01 No
PT01G02080 ptr PACid=17325689;name=POPTR_0001s02270;alias=pt038330m,estExt_Genewise1_v1.C_290069; transcript=eq;prot=eq;protein_id=17325689; - scaffold_1 No
PT03G08320 ptr PACid=17308383;name=POPTR_0003s09270;alias=pt023174m,fgenesh4_pg.C_LG_III000731; transcript=eq;prot=eq;protein_id=17308383; + scaffold_3 No
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