Gene family  

Sub-families
ORTHO010936 (18 genes in 15 species)
ORTHO019185 (6 genes in 6 species)
View all sub-families (2)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (1 gene)
ath
Arabidopsis thaliana (1 gene)
bdi
Brachypodium distachyon (1 gene)
cpa
Carica papaya (2 genes)
fve
Fragaria vesca (1 gene)
gma
Glycine max (1 gene)
lja
Lotus japonicus (2 genes)
mdo
Malus domestica (1 gene)
mes
Manihot esculenta (2 genes)
mtr
Medicago truncatula (1 gene)
osa
Oryza sativa ssp. japonica (3 genes)
osaindica
Oryza sativa ssp. indica (1 gene)
ppa
Physcomitrella patens (1 gene)
ptr
Populus trichocarpa (1 gene)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (1 gene)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (1 gene)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (1 gene)



The gene family HOM005641 has 25 genes in 20 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
This page uses the Flash plugin.




Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 25 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL7G22330 aly name=fgenesh1_pg.C_scaffold_7001912;pid=354739;prot=eq;tid=354739 + scaffold_7 No
AT4G20060 ath EMBRYO DEFECTIVE 1895 (EMB1895); FUNCTIONS IN: binding; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-type fold (InterPro:IPR016024); Has 205 Blast hits to 155 proteins in 64 species: Archae - 0; Bacteria - 0; Metazoa - 163; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).;ARM repeat superfamily protein transcript=eq;prot=eq; - 4 No
BD2G03497 bdi pid=Bradi2g03497.1;tid=Bradi2g03497.1;GeneName=Bradi2g03497;transcript=eq;prot=eq - Bd2 No
CP00030G01050 cpa name=evm.TU.supercontig_30.105;pid=evm.TU.supercontig_30.105;prot=eq;transcript=eq + supercontig_30 No
CP00030G01060 cpa name=evm.TU.supercontig_30.106;pid=evm.TU.supercontig_30.106;prot=eq;transcript=eq + supercontig_30 No
FV0G37610 fve Integrator complex subunit 7 (Int7) (probable) transcript=eq;prot=eq;pid=gene28294 + scf0513124 No
GM19G04030 gma 19 pid=16311835;transcript=eq;prot=eq;name=Glyma19g04030.1 - Gm19 No
LJ2G035820 lja partial;prot=eq;transcript=eq;scaffold=CM0545;name=chr2.CM0545.590.nc + chr2 No
LJ2G035840 lja partial;prot=eq;transcript=eq;scaffold=CM0545;name=chr2.CM0545.610.nc - chr2 No
MD00G297700 mdo transcript=eq;prot=eq;pid=MDP0000260076;tid=MDP0000260076;contig=MDC012682.404 - MDC012682.404 No
ME11919G00030 mes PACid=17991224;RNAname=cassava4.1_024175m;GeneName=cassava4.1_024175m.g;transcript=eq;prot=eq - scaffold11919 No
ME11919G00040 mes PACid=17991228;RNAname=cassava4.1_020921m;GeneName=cassava4.1_020921m.g;transcript=eq;prot=eq - scaffold11919 No
MT4G078330 mtr Integrator complex subunit 7 (AHRD V1 ***- Q5ZL91); contains Interpro domain(s) IPR016024 Armadillo-type fold transcript=eq;prot=eq;pid=Medtr4g078330.1; + 4 No
OS01G01380 osa expressed protein transcript=eq;prot=eq; + 1 No
OS01G09305 osa EMB1895, putative transcript=eq;prot=eq; - 1 No
OS01G09310 osa EMB1895, putative, expressed transcript=eq;prot=eq; - 1 No
OSINDICA_01G00390 osaindica source=BGI China;type=FgeneSH; transcript=eq;prot=eq;name=OsIFCC000024; + Chr01 No
PP00408G00130 ppa NULL name=estExt_fgenesh1_pg.C_4080013,pid=173084,prot=eq,tid=173084 + scaffold_408 No
PT00G15570 ptr PACid=17303187;name=POPTR_0025s00450;alias=pt002442m,fgenesh4_pg.C_LG_XVIII001043; transcript=eq;prot=eq;protein_id=17303187; + scaffold_25 No
RC27942G00070 rco name=27942.m000160;gene=27942.t000007;note=27942.t000007;transcript=eq;prot=eq + 27942 No
<< previous
1 | 2 next >>

Download genes

Include following columns
gene_id
species
description
comment
strand
chr
outlier